Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g2204 ATGCCAAAATTTCATCTGGGTCTCTCTCAAATCCCTCATTCACCATCAATGGAAGATGAAAATCACTCTTCATCTTCCATGTCATACCTCAGCACACCCTTAATACAAACTCCAAAATATCAACCTTCCCCTAAACCACAACACAAAAGAACCATAGTCACAACATTAATGGAAGCTGCAACTTTCACATCCTCTTCTTTCAAAGAAGACACTTATTACATTTCCCATCTCAAATCTTCAGAGAAAAAAGCATTGCAAGAGTTCAAGAAAAAGCTTTTATCTTCAGATCAAACCAACCAAAATGCTTCCATGTGGGGTGTTTCTTTGCTTAATGGTGATGATATTGCTGATGTGTTACTTTTGAAGTTCCTTAGAGCTAGAGACTTTAAAGTCAATGATGCATTCAACATGCTTGTGAAATGTCTTGTGTGGAGAAAAGAATTTGGTGCTGAAAATGTTGTGGATGAAGATTTGGGATTTAAAGAGCTTGAAGGTGTTGTAGCTTTTACTCATGGCTTTGATAGAGAGGGACACCCTGTGTGTTACAATCATTATGGTATGTTCAAAGATAAGGATATGTATGAGAGGATTTTTGGTGATGAAGAGAAGTTGAACAAGTTTTTGAGGTGGAGGGTTCAAGTTCTTGAGAAAGGAATCAAGCTTTTACATTTTAAGCCTGGTGGTGTTAATTCTTTGATTCAAATCACTGATCTTAAGGACATGCCTAAGAGAGAGTTAAGGGCTGTCTCAAATCAAATCCTTTCTTTGTTTCAAGATAATTATCCTGAAATGGTTGCTCGGAAGATTTTCATCAATGTGCCATGGTATTTCAGCATGGTATATTCAATGTTCAGTCCATTTCTGACTCAAAGAACTAAGAGCAAGTTTGTGATCTCTAAAGAAGGAAATTCTGCAGAAACACTCTATAAATTTATAAGGCCTGAGAATATTCCTGTTCAATATGGAGGATTGAGTCGACCTAATGATTTTCAAAATGGTCCCCCAAAAACAGCTTCTGAGTTCACTGTTAAAGGAGGAGAAAAAGTAAACATACAAATAGAAGGAATTGAGAGTGGTGCAATAATAAAGTGGGAGATTGTAGTTGGAGGCTGGGATTTGGAATACAGTGCTGAATTTGTACCAAATGCAGAAAGTAGCTACACTATTGAAGTTGAAAAAGCAAGAAAAGTTGATGCATCAGAAGAAGCAATTCAGAATTCATTCACATCAAAAGAAGCAGGCATAATAGTACTCTCAGTTGATAATTCTGCTTCTAGGAAGAAAAAAGTTGCTGCTTATCGCTATTCTGTCCGCAAATACAACAACAATACACCATCTGATATGCAATTAAGCCTCAAATAG 1362 0.3664 MPKFHLGLSQIPHSPSMEDENHSSSSMSYLSTPLIQTPKYQPSPKPQHKRTIVTTLMEAATFTSSSFKEDTYYISHLKSSEKKALQEFKKKLLSSDQTNQNASMWGVSLLNGDDIADVLLLKFLRARDFKVNDAFNMLVKCLVWRKEFGAENVVDEDLGFKELEGVVAFTHGFDREGHPVCYNHYGMFKDKDMYERIFGDEEKLNKFLRWRVQVLEKGIKLLHFKPGGVNSLIQITDLKDMPKRELRAVSNQILSLFQDNYPEMVARKIFINVPWYFSMVYSMFSPFLTQRTKSKFVISKEGNSAETLYKFIRPENIPVQYGGLSRPNDFQNGPPKTASEFTVKGGEKVNIQIEGIESGAIIKWEIVVGGWDLEYSAEFVPNAESSYTIEVEKARKVDASEEAIQNSFTSKEAGIIVLSVDNSASRKKKVAAYRYSVRKYNNNTPSDMQLSLK* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g2204 453 Pfam CRAL/TRIO domain 164 323 IPR001251 -
Tpr6g2204 453 Gene3D - 157 340 IPR036865 -
Tpr6g2204 453 SUPERFAMILY CRAL/TRIO domain 161 326 IPR036865 -
Tpr6g2204 453 CDD SEC14 160 324 IPR001251 -
Tpr6g2204 453 PRINTS Cellular retinaldehyde-binding protein signature 119 141 - -
Tpr6g2204 453 PRINTS Cellular retinaldehyde-binding protein signature 248 269 - -
Tpr6g2204 453 PRINTS Cellular retinaldehyde-binding protein signature 281 300 - -
Tpr6g2204 453 Gene3D - 56 148 - -
Tpr6g2204 453 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 340 449 IPR036598 -
Tpr6g2204 453 SMART CRAL_TRIO_N_2 116 141 IPR011074 -
Tpr6g2204 453 MobiDBLite consensus disorder prediction 1 28 - -
Tpr6g2204 453 PANTHER PATELLIN-6 40 441 - -
Tpr6g2204 453 SMART sec14_4 162 326 IPR001251 -
Tpr6g2204 453 ProSiteProfiles GOLD domain profile. 305 439 IPR009038 -
Tpr6g2204 453 PANTHER PATELLIN-1 40 441 IPR044834 GO:0008289
Tpr6g2204 453 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 156 329 IPR001251 -
Tpr6g2204 453 Gene3D GOLD domain 341 437 - -
Tpr6g2204 453 Pfam CRAL/TRIO, N-terminal domain 84 140 IPR011074 -
Tpr6g2204 453 MobiDBLite consensus disorder prediction 14 28 - -
Tpr6g2204 453 SUPERFAMILY CRAL/TRIO N-terminal domain 72 156 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g2204 Tpr-Chr6 23934214 23937069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g2204 120 318 Acyl Lipid Metabolism Gene Families AT1G55840 28.571 1.29e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g2204 - - cam:101508309 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g2204 6 23934214 23937069 Tpr4g0649 4 6027200 6030845 PCT