Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1996 ATGGCGAAGGAAGAAGTGTTCGAGTTTCTCGGTTGTGTCCCTTTGCTTCAGAGGCTTCCTAGATCATCTTTACGGAACATTTCTCAACTTGTCATTCTCAAAAACTATGAGCCGGGAGAGTATGTTGTTCGTGATGGAGAGCCTGGAGAGGGTCTTTACTTCATTTGGGAAGGAGAGGCTGAGGTTATTGGATCTGGTCTTGCTGATGATCAAAAGGATCTAGAATTTCAACTGAAAAGATATGACTATTTTGGTATTGGTTTATCAAATGCAGTTCACCATGCTGATGTTGTAGCTTTGACTAAGCTATCCTGCCTAGTGCTGCCCCATGAGCACTCGACACTGTTGCAGCCAAATTCTATCTGGAGTGCAGAAAAATCTCTTGAGACATGCTCACCTGTAGAGCATATATTGCATTTGGAACCAATAGAGGTAGATATTTTTCAAGGAATAACCCCACCAGATGCTCCAAAATTTGGGAAGGTTTTTGGGGGACAGCTAATTGGACAGGCATTGGCTGCGGCATCAAAGTCTGTTGATTGTCTTAAAGTTGTTCATAGCTTGCATGTGTATTTTCTTCTCGTGGGGGATTTTAACATACCAATTCTATATAAAGTTAAGCGTCTGCGCGAAGGGAAGAGCTTTGCTACGAGGAAAGTGGATGCAATTCAAAAGGGAAACATCATATTCACTTTGCTGGCTTCATTTCAGAAAGATGAATTAGGATTTCAACACCAGGAAGTGTCTATGCCATCTGTCCCTGCCCCAGACCAGCTTCTATCATTGGAAGAGTTACGAGAGCAACGTCTTACTGACCCTCGTCTTCCAAGAACTTACCGGGCCAAAGTTGCTACAGCTGAGTTCATTCCCTGGCCCATAGAGATACGATTCTGTGAACCTAGACCAACAACAAATCAGACCAAGTCTCCTCCTAGTTTGAGATACTGGTTTAGAGCAAAAGGAAAATTGTCGGATGATCAGGCCTTGCATAGGTGTGTGGCAGCATTTGCTTCTGATCTATTATTTCTTCAAGTAAGTGTGAATCCCCACCGTCGGGTGGGTTTAAAGACACGTGCTGTAAGTTTGGACCACTCCATGTGGTTTCACAGACCGTTAAGAGCTGATGACTGGATACTATATGAGATATTTAGCCCTGCTGCCTTCAATGCGCGTGGCTATGTCACAGGCCGGATGTTCAATCAAAAGGGAGAGCTTCTTGTTTCATTGGTTCAAGAAGGCCTGACAAGGAAGGAAATTCCCAAAAGATCAGCCACCAACTCTAAGTTGTGA 1290 0.4388 MAKEEVFEFLGCVPLLQRLPRSSLRNISQLVILKNYEPGEYVVRDGEPGEGLYFIWEGEAEVIGSGLADDQKDLEFQLKRYDYFGIGLSNAVHHADVVALTKLSCLVLPHEHSTLLQPNSIWSAEKSLETCSPVEHILHLEPIEVDIFQGITPPDAPKFGKVFGGQLIGQALAAASKSVDCLKVVHSLHVYFLLVGDFNIPILYKVKRLREGKSFATRKVDAIQKGNIIFTLLASFQKDELGFQHQEVSMPSVPAPDQLLSLEELREQRLTDPRLPRTYRAKVATAEFIPWPIEIRFCEPRPTTNQTKSPPSLRYWFRAKGKLSDDQALHRCVAAFASDLLFLQVSVNPHRRVGLKTRAVSLDHSMWFHRPLRADDWILYEIFSPAAFNARGYVTGRMFNQKGELLVSLVQEGLTRKEIPKRSATNSKL* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1996 429 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 248 416 IPR029069 -
Tpr6g1996 429 SUPERFAMILY cAMP-binding domain-like 4 112 IPR018490 -
Tpr6g1996 429 TIGRFAM tesB: acyl-CoA thioesterase II 138 416 IPR003703 GO:0006637|GO:0047617
Tpr6g1996 429 Gene3D Jelly Rolls 2 124 IPR014710 -
Tpr6g1996 429 Pfam Cyclic nucleotide-binding domain 34 111 IPR000595 -
Tpr6g1996 429 ProSiteProfiles cAMP/cGMP binding motif profile. 15 85 IPR000595 -
Tpr6g1996 429 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 130 240 IPR029069 -
Tpr6g1996 429 CDD CAP_ED 15 119 IPR000595 -
Tpr6g1996 429 Pfam Thioesterase-like superfamily 160 414 - -
Tpr6g1996 429 SMART cnmp_10 15 132 IPR000595 -
Tpr6g1996 429 CDD Thioesterase_II_repeat1 313 414 - -
Tpr6g1996 429 ProSitePatterns Cyclic nucleotide-binding domain signature 1. 42 58 IPR018488 -
Tpr6g1996 429 PANTHER ACYL-COA THIOESTERASE 51 429 IPR003703 GO:0006637|GO:0047617
Tpr6g1996 429 PANTHER ACYL-COA THIOESTERASE 51 429 - -
Tpr6g1996 429 CDD Thioesterase_II_repeat2 146 238 - -
Tpr6g1996 429 Gene3D - 129 418 IPR042171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1996 Tpr-Chr6 21648148 21654605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1996 1 429 Acyl Lipid Metabolism Gene Families AT1G01710 66.200 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1996 K01068 - gmx:100805018 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1996 6 21648148 21654605 Tpr5g1252 5 24740135 24755634 PCT