Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1987 ATGTCGGAAATCGACATGTCAGTTATTAAACCTGAGATGATGAAGCCCTATATTTGGCTTCAGACATCAGATGGGTCAATCCAACAGGTGGAACAAGAAATTGCAATGTTTTGCCCTTTCATTTGTCAAGAAATAATACAAAAAGGCACAGGATCTTCCAAAAATTGTGCGATATGCCTTCCTGAAAAAGTCAGTCCTGCTATGCTGAGCTTAGTTCTTGATTATTGTCGATTTCATCAAGTGCCAGGTCGCTCAAACAAGGAACGGAAGTCTCACGATGAAAAATTCATCAGGATGGATACCAAACGGCTCTGTGACTTGACATCAGCTGCAGACAGCCTTCAATTAAGGCCGCTGGTTGATCTTACAAGTCGTACACTTGCAAGAATAATTGAAGGAAAATCTCCCGAAGAGATACGAGAGATATTTCATTTGCCGGATGATCTCACAGAGGAAGAGAAGTTGGAGCCTCTGAAAAACACAACTGATGACCCGAGGATAAGGCTTTTGAACCGGTTGTATGCAAAAAAAAGGAAAGAGCTAAAAGAGCGTGGAAGATTAAAGAATGTTGAATTAGAAGAAGAACATGTAGATGAACGCTCAGTTGATGACCTTTTGTCTTTTATTAATGGAAATGATGGAGATTCAAAAGGGTCTAAAACTTCTAAGAATAAAAAGAAGAATAGAAGAAAAAAAGAGCAGAAGAAAAACTCTACTTTGACTGAAGCTTCCGAAGTGAAAAAGGAGTTAAGTGGTCATAGTGCTGTATCTGATAAAATTGCTGGGACCTCAAATATTTATACAGAAGATGACACTTTTAGTCATAAAGAGTTTGATGATGATGAAGATGTAGATGATGAGATCGATCCTGCACTACAGGCAAAAATTGACAGGGAAGTTGAAGATTTTGCCCGCCGTTTAAATTCTGACTGGCCAGAAAGGATGCAAGAATTTTTATCATCAGGGCAAGAAAGGAAATCAATACTTTTTGCTACCAACGGGAATGGTTTTCTAAGACGAAATACTTGA 1029 0.3868 MSEIDMSVIKPEMMKPYIWLQTSDGSIQQVEQEIAMFCPFICQEIIQKGTGSSKNCAICLPEKVSPAMLSLVLDYCRFHQVPGRSNKERKSHDEKFIRMDTKRLCDLTSAADSLQLRPLVDLTSRTLARIIEGKSPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKERGRLKNVELEEEHVDERSVDDLLSFINGNDGDSKGSKTSKNKKKNRRKKEQKKNSTLTEASEVKKELSGHSAVSDKIAGTSNIYTEDDTFSHKEFDDDEDVDDEIDPALQAKIDREVEDFARRLNSDWPERMQEFLSSGQERKSILFATNGNGFLRRNT* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1987 342 MobiDBLite consensus disorder prediction 208 263 - -
Tpr6g1987 342 Pfam Skp1 family, dimerisation domain 118 154 IPR016072 GO:0006511
Tpr6g1987 342 Gene3D Potassium Channel Kv1.1; Chain A 12 162 IPR011333 -
Tpr6g1987 342 PANTHER SKP1-LIKE PROTEIN 20 1 267 - -
Tpr6g1987 342 Pfam Skp1 family, tetramerisation domain 17 80 IPR016073 GO:0006511
Tpr6g1987 342 Coils Coil 223 243 - -
Tpr6g1987 342 PANTHER SKP1 1 267 IPR016897 GO:0006511
Tpr6g1987 342 SUPERFAMILY POZ domain 16 80 IPR011333 -
Tpr6g1987 342 SUPERFAMILY Skp1 dimerisation domain-like 91 160 IPR036296 GO:0006511
Tpr6g1987 342 SMART skp1_3 15 116 IPR001232 GO:0006511
Tpr6g1987 342 MobiDBLite consensus disorder prediction 235 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1987 Tpr-Chr6 21535745 21548093 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1987 - - gmx:100809439 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1987 6 21535745 21548093 Tpr5g1294 5 25400889 25412498 PCT