Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1294 ATGTCAGAAACTGACATGGCAGTTATTAAACCTGAGATGATGAAGCCTTATGTGTGGCTTCAAACGTCCGATGATTCAATCCAACAAGTGGAACAAGAGATTGCGATGTTTTGTCCATTTATATGTCAAGAAATAATACAAAAAGGCATGGGAACTTCCAAGAATTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCAATGTTGAGCTTAATTCTTGATTACTGTCGATTTCATCAAGTACTAGGCCGCTCAAACAAGGAACGGAAGGCTTATGATGAGAAATTCGTTAGGATAGACACAGAGAAGCTATGCGAGTTGACGTCTGCTGCCGACAGCCTTCAGTTAAAGCCATTGGTTGATCTTACCAGTCGTGCTCTAGCTAGAATAATTGAAGGAAGATCACCGGAGGAGATACGTGACATATTTCATTTGCCTGATGATCTTACAGAGGAAGAAAAATTGGAGCCCTTGAGGAACATAACTGACGACCCAAGAATTAGGCTTTTGAACCGCTTGTATGCCAAGAAGAGGAAAGAACTTAAAGAGCGTGAAAGGATAAAGAATGTTGAAGTTGAAGAAGAACATGTTGATGAGCGTTCAGTTGATGACCTTTTATCTTTTATTAATGGAAATGATAGAGATCCGAAGGGGATTAAAACTTCTAAGAATAAAAAGAAGAACCGAAGGAAAAAAGACCAACAGAAGAATTCTTCTTCGAAGGAGGAAGTATCTGTACCAGATAAGAAGGAGGTGGTAAACGGCCATAATATCAGACACCAAAGTTCGGAAGCTGAGGGACCGTGTGAGACCTCAAATTTACACCATACATATGATGATCCTATGCTTGAGTTCGATGATGATGATACAGATGATGAGATTGATCCAGCATTAAAAGCAAAAATTGACAGGGAAGTAGAAGATTTTGCCCGCAGATTAAATTGTGACTGGCCAGAGAGAATAAAAGACTTTTTCTCGTCAGCGCAAGAAAGGAAGACGATGCTTTCTACTACCAACGGGAATGGTTTTCTAAGGCGACATGCTTGA 1047 0.4021 MSETDMAVIKPEMMKPYVWLQTSDDSIQQVEQEIAMFCPFICQEIIQKGMGTSKNCAICLPQQVSPAMLSLILDYCRFHQVLGRSNKERKAYDEKFVRIDTEKLCELTSAADSLQLKPLVDLTSRALARIIEGRSPEEIRDIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAKKRKELKERERIKNVEVEEEHVDERSVDDLLSFINGNDRDPKGIKTSKNKKKNRRKKDQQKNSSSKEEVSVPDKKEVVNGHNIRHQSSEAEGPCETSNLHHTYDDPMLEFDDDDTDDEIDPALKAKIDREVEDFARRLNCDWPERIKDFFSSAQERKTMLSTTNGNGFLRRHA* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1294 348 Pfam Skp1 family, dimerisation domain 117 154 IPR016072 GO:0006511
Tpr5g1294 348 Gene3D Potassium Channel Kv1.1; Chain A 12 161 IPR011333 -
Tpr5g1294 348 SUPERFAMILY Skp1 dimerisation domain-like 91 159 IPR036296 GO:0006511
Tpr5g1294 348 SUPERFAMILY POZ domain 16 80 IPR011333 -
Tpr5g1294 348 MobiDBLite consensus disorder prediction 208 255 - -
Tpr5g1294 348 SMART skp1_3 15 116 IPR001232 GO:0006511
Tpr5g1294 348 PANTHER SKP1-LIKE PROTEIN 20 1 263 - -
Tpr5g1294 348 PANTHER SKP1 1 263 IPR016897 GO:0006511
Tpr5g1294 348 MobiDBLite consensus disorder prediction 235 255 - -
Tpr5g1294 348 Pfam Skp1 family, tetramerisation domain 18 80 IPR016073 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1294 Tpr-Chr5 25400889 25412498 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1294 - - gmx:100794666 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1294 5 25400889 25412498 Tpr5g1294 5 25400889 25412498 ECH
Tpr5g1294 5 25400889 25412498 Tpr6g1654 6 17800929 17808808 ECH
Tpr6g1987 6 21535745 21548093 Tpr5g1294 5 25400889 25412498 PCT