Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1959 ATGTCTTTGGAAAATAAGAATCACCAGCTTTTATCAAAGATTGCTACCAATGATAAACATGGTGAAAATTCTCCTTATTTTGATGGGTGGAAAGCTTATGAATCAAACCCATTTCACCCTTCAAAAAATCCTCAAGGGGTTATCCAAATGGGTCTTGCTGAGAATCAGCTTTGCTTTGATCTAATTGAAGAGTGGATAAGGAACAATCCAAAGGCATCAATTTGCACTCCAGAAGGTGTGAATGAATTCAGAAATATTGCAAATTTTCAAGACTATCATGGATTGCCAGAATTCAGAAATGCTGTGGCAAATTTCATGTCAAAAGTGAGAGGTGGTAGGGTAAGATTTGATCCTGACCGTATAATTATGAGTGGTGGAGCAACAGGAGCAAATGAATTAATCATGTTCTGTTTGGCTGATCCTGGTGATGCTTTTTTGGTTCCTAGCCCTTATTATCCAGCATTTGTTCGTGATTTGTGTTGGAGAACCGGTGTGCAACTAATTCCTGTCCAATGTCATAGCTCAAACAATTTTAAGATAACAAGAGAAGCACTTGAAGAAGCTTATATGAAAGCACAAGAAGGAAACATCAATGTGAAAGGGTTAATCATAACAAATCCATCAAACCCTCTAGGAACAACAATAGAGAAAGAAACATTAAAGAGCATAGTTAGTTTCATCAATGAAAACAACATTCATTTAGTGTGTGATGAAATCTATTCTGGCACAGTTTTCGACACTCCGAAATACGTAAGTGTCGCGGAAGTTATACAAGAAATGGAAGAATGCAAAAAAGACCTCATTCATATTATCTATAGTTTATCAAAAGACATGGGACTTCCAGGTTTCAGAGTCGGTTTAGTTTATTCGTACAACAATGAAGTTGTGAATTGCGGTCGAAAAATGTCGAGTTTTGGATTAGTCTCATCGCAGACACAACATTTTCTAGCCGCAATGCTTTCCGACAATAAATTTGTGGATAAGTTTTTGGCTGAGAGTTCGAGAAGGTTAAGGGAAAGACGCGAATTTTTCACAAAGGGACTTGAAAAAGTCAACATTACTTGCTTACCAAGTAATGCAGGGCTTTTCTTTTGGATGAATTTGAGGAGTTTATTGAAAGAGAAAACATTTGAAGGTGAAATGAAACTGTGGCGTTTGATTATCAATGAAGTGAAACTTAATGTTTCGCCGGGTTCGGCTTTTGATTGCTCTGAGCCTGGTTGGTACAGAGTTTGTTTTGCTAACATGGATCATGAAACTGTTGAAATTGCATTGATGAGAATCAGAGCATTTGTTAATGGTAGAGACAAAGGGAAAAATATGGAAATCAAACGTTGGAAGAGTAACCTAAGACTTAGCTTTTCTTCAAGAAGGTTTGATGAGAAGGTTATGTCTCCTCACATGATGTCTCCTCATTCACCAATGCCTCATTCACCACTTGTTCGAGCTACTTAA 1455 0.3732 MSLENKNHQLLSKIATNDKHGENSPYFDGWKAYESNPFHPSKNPQGVIQMGLAENQLCFDLIEEWIRNNPKASICTPEGVNEFRNIANFQDYHGLPEFRNAVANFMSKVRGGRVRFDPDRIIMSGGATGANELIMFCLADPGDAFLVPSPYYPAFVRDLCWRTGVQLIPVQCHSSNNFKITREALEEAYMKAQEGNINVKGLIITNPSNPLGTTIEKETLKSIVSFINENNIHLVCDEIYSGTVFDTPKYVSVAEVIQEMEECKKDLIHIIYSLSKDMGLPGFRVGLVYSYNNEVVNCGRKMSSFGLVSSQTQHFLAAMLSDNKFVDKFLAESSRRLRERREFFTKGLEKVNITCLPSNAGLFFWMNLRSLLKEKTFEGEMKLWRLIINEVKLNVSPGSAFDCSEPGWYRVCFANMDHETVEIALMRIRAFVNGRDKGKNMEIKRWKSNLRLSFSSRRFDEKVMSPHMMSPHSPMPHSPLVRAT* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1959 484 MobiDBLite consensus disorder prediction 465 484 - -
Tpr6g1959 484 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 447 - -
Tpr6g1959 484 CDD AAT_like 88 430 - -
Tpr6g1959 484 Pfam Aminotransferase class I and II 48 428 IPR004839 GO:0009058|GO:0030170
Tpr6g1959 484 Gene3D Aspartate Aminotransferase, domain 1 36 427 IPR015422 GO:0003824
Tpr6g1959 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 50 76 - -
Tpr6g1959 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 83 99 - -
Tpr6g1959 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 140 - -
Tpr6g1959 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 142 163 - -
Tpr6g1959 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 196 220 - -
Tpr6g1959 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 232 255 - -
Tpr6g1959 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 267 291 - -
Tpr6g1959 484 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 299 322 - -
Tpr6g1959 484 Gene3D - 70 322 IPR015421 GO:0003824
Tpr6g1959 484 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 273 286 IPR004838 GO:0003824|GO:0009058|GO:0030170
Tpr6g1959 484 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 6 447 - -
Tpr6g1959 484 SUPERFAMILY PLP-dependent transferases 16 432 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1959 Tpr-Chr6 21200336 21204056 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1959 K20772 - gmx:100500423 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1959 6 21200336 21204056 Tpr5g1349 5 26320438 26325327 PCT