Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1349 ATGGGATTAGGGAGTAAGAGTTTTCAACTTCTGTCCAAGATTGCAACCAATGACCAACATGGTGAAAATTCTCCATACTTTGATGGGTGGAAAGCATATGAGAAAAACCCATTTCACCCTACAAAAAATCCTCATGGTGTAATTCAGATGGGTCTTGCTGAAAATCAGCTTTGCTTTGATCTAATAGAAGAATGGATAAAGAATAATCCCAAGGCTTCAATTTGCACTCCAGAAGGAATGCATAATTTCAGAGATATTGCTAACTTTCAAGACTATCATGGGCTGCCAGAGTTTACAAGTGCTATGGCAAAATTTATGTCAAAAGTGAGAGGTGGTAGAGTGAGATTTGATCCGAACCGTATATTGATGAGTGGAGGAGCAACAGGAGCAAATGAATTAATCATGTTTTGTTTGGCTGATCCAGGAGATGCTTTTCTAGTTCCTACCCCTTACTATCCAGGATTCGTCCGTGACTTGTGTTGGAGAACTAGGGTTCAATTAATTCCTGTCCATTGTGATAGCTCCAACAATTTCAAGATAACAAGAGAAGCACTTGAAGTAGCATACAACAAAGCACAAGAAGATAACATCAATATAAAAGGATTGATCATAACAAATCCTTCCAACCCATTAGGCACAACCTTAGACAAAGAGACACTAAGGAGTCTTATAAGTTTCATTAATGAGAAAACAATCCATTTAGTTTGTGATGAAATCTATGCAGCCACAGTTTTCACATCTCCAACCTATGTAAGTGTTAGTGAAGTCATACAAGAAATCAATTGCAACCTTGATCTCATTCACATAATTTATAGTTTATCAAAAGATTTAGGGTTCCCTGGTTTTAGAGTTGGGATTGTTTATTCGTACAATGATCAAGTTGTGAATTGCGGAAGAAAAATGTCAAGCTTTGGATTAGTCTCATCTCAAACTCAACATATGCTTGCTTCAATGCTTTGTGATGAAAAATTTGTTGACAAGTTTCTCTTAGAGAGTTCGAGAAGGTTATTTAAAAGACATGAAAAATTTACAAAGGGACTTGAAGAGGTTGAGATCATTCGATTTCCAAGTAATGCGGGACTTTTTTACTGGATGAACTTGAAAAGTTTGCTTAAAGAGGAAACAATTGAAGAAGAGTTGAAGCTTTGGCAGGTGATTATTAATGAGGTGAAGCTTAATGTGTCACCGGGGTCCTCTTTTAATTGTTCCGAGGTAGGTTGGTTTAGGGTTTGTTATGCTAATATTGATGATGAAACGGTTGAAGTTGCATTGAAAAGAATAAGAGAATTTATAGGCAAAGAAACAAAGAAGAAAATTGAACAAGTTAAACGTTGGCAACCAAATTTAAGGCTTAGCTTCACTTCAAAGAGGTTTGATGAGACTGTTTTGTCACCTCATAATCACATAATTATCTCTCCTCATTCACCACTTGTTCGAGCTACATGA 1446 0.3651 MGLGSKSFQLLSKIATNDQHGENSPYFDGWKAYEKNPFHPTKNPHGVIQMGLAENQLCFDLIEEWIKNNPKASICTPEGMHNFRDIANFQDYHGLPEFTSAMAKFMSKVRGGRVRFDPNRILMSGGATGANELIMFCLADPGDAFLVPTPYYPGFVRDLCWRTRVQLIPVHCDSSNNFKITREALEVAYNKAQEDNINIKGLIITNPSNPLGTTLDKETLRSLISFINEKTIHLVCDEIYAATVFTSPTYVSVSEVIQEINCNLDLIHIIYSLSKDLGFPGFRVGIVYSYNDQVVNCGRKMSSFGLVSSQTQHMLASMLCDEKFVDKFLLESSRRLFKRHEKFTKGLEEVEIIRFPSNAGLFYWMNLKSLLKEETIEEELKLWQVIINEVKLNVSPGSSFNCSEVGWFRVCYANIDDETVEVALKRIREFIGKETKKKIEQVKRWQPNLRLSFTSKRFDETVLSPHNHIIISPHSPLVRAT* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1349 481 SUPERFAMILY PLP-dependent transferases 16 432 IPR015424 -
Tpr5g1349 481 CDD AAT_like 88 429 - -
Tpr5g1349 481 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 272 285 IPR004838 GO:0003824|GO:0009058|GO:0030170
Tpr5g1349 481 Gene3D - 70 321 IPR015421 GO:0003824
Tpr5g1349 481 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 6 448 - -
Tpr5g1349 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 50 76 - -
Tpr5g1349 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 83 99 - -
Tpr5g1349 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 120 140 - -
Tpr5g1349 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 142 163 - -
Tpr5g1349 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 196 220 - -
Tpr5g1349 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 232 255 - -
Tpr5g1349 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 266 290 - -
Tpr5g1349 481 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 298 321 - -
Tpr5g1349 481 Gene3D Aspartate Aminotransferase, domain 1 36 426 IPR015422 GO:0003824
Tpr5g1349 481 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 6 448 - -
Tpr5g1349 481 Pfam Aminotransferase class I and II 48 427 IPR004839 GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1349 Tpr-Chr5 26320438 26325327 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1349 K20772 - gmx:100813347 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1349 5 26320438 26325327 Tpr5g1349 5 26320438 26325327 ECH
Tpr6g1959 6 21200336 21204056 Tpr5g1349 5 26320438 26325327 PCT