Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1138 ATGGAGCAAAATTTGATCTTGAGAATGGTGTTAATGGTGGGTCTAATGGGTTGTTTTTGTTGTTATGTGGAAGGGCTTGGTGTTAACTGGGGAACACAAGCAACTCACAAATTACCACCAGAAACTGTTGTTAAGATGTTGAAGGATAATGGGATTCAAAAAGTTAAGCTTTTTGATGCTGATGATACAACAATGAGTGCTTTGGCTGGTAGTGGAATTGAAGTTATGGTTGCAATCCCTAATAATCAACTTGAAGTTATGAATGATTATAAGCGTGCTCAACAATGGGTTAGGAAGAATGTTACTCGTTATAACTTTGATGGAGGAGTTAAGATCAAATATGTAGCAGTTGGGAATGAGCCATTTTTGACATCCTACAACAATTCATTCTTGAACATCACACTGCCTGCACTGCAGAACATTCAAAATGCCATTAATGAAGCTGGTCTTGGCGACACCGTAAAAGCAACGGTGCCCTTAAATGCGGATGTGTATGAGTCTCCAAAAGAAAATTCTCTTCCATCTGCAGGAATATTTAGGCCGGATATCAATGGTCTCATGACTCAGATGGTAGCATTTCTCAACAAGAACGGTGCACCATTTACCGTCAACATTTACCCCTTCTTAAGTCTTTACGGAAATGACAACTTTCCTTTCAATTTTGCCTTCTTCGACGGAGTAGACAACCCGATAAACGATAACGGAATCATATACACCAATGTCTTTGACGCAAATTTTGATACATTGGTTGCCGCTCTCAACTCAGTCGGTTTCGGCAACACACCAATTTTGGTAGGAGAAGTAGGATGGCCTACAGAAGGCGATAAGAATGCCAATACCGGCAATGCATTAAGATTCTACAATGGCCTTCTTTCAAGGCTCGCAGCAAACAAAGGAACACCTCGTCGCCCTGGATTCATTGAAGTTTATCTGTTCGGACTCATAGACGAGGATGCAAAGAGCATCGCACCAGGGAACTTTGAGAGACACTGGGGAATATTTCGATACGACGGTCAGCCAAAGTTTCCAATGGATCTTTCAGGTCAAGGTTCAAACAAACTTCTAATAGGTGCACAAAATGTGAAGTATCTTGATTCAACGTGGTGCATGTTTAACCCTGATGCTAAAGATCTCAGCAAACTTGCCGATAACATAAACTTCGCTTGCACCTTTGGAGATTGCACTGCACTTGGATACGGATCTTCTTGCAACAACCTTGATGCTAATGGAAATGCTTCTTACGCATTCAACATGTACTACCAGACGCAGAATCAGAATCGTCAAGCATGCAATTTCGAAGGTTTAGCTAAGGTTACTACCGATAACATTTCAACACCTACTTGCAATTTCCTCATTCAGATAGTTCCTTCTGCAGCATCTTCTTTGATGCCCTCATTTGCTGTTTTGTTGTTTATTGCTTTTTCAATTATTCTCTTGGCTTAG 1443 0.4089 MEQNLILRMVLMVGLMGCFCCYVEGLGVNWGTQATHKLPPETVVKMLKDNGIQKVKLFDADDTTMSALAGSGIEVMVAIPNNQLEVMNDYKRAQQWVRKNVTRYNFDGGVKIKYVAVGNEPFLTSYNNSFLNITLPALQNIQNAINEAGLGDTVKATVPLNADVYESPKENSLPSAGIFRPDINGLMTQMVAFLNKNGAPFTVNIYPFLSLYGNDNFPFNFAFFDGVDNPINDNGIIYTNVFDANFDTLVAALNSVGFGNTPILVGEVGWPTEGDKNANTGNALRFYNGLLSRLAANKGTPRRPGFIEVYLFGLIDEDAKSIAPGNFERHWGIFRYDGQPKFPMDLSGQGSNKLLIGAQNVKYLDSTWCMFNPDAKDLSKLADNINFACTFGDCTALGYGSSCNNLDANGNASYAFNMYYQTQNQNRQACNFEGLAKVTTDNISTPTCNFLIQIVPSAASSLMPSFAVLLFIAFSIILLA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1138 480 PANTHER GLYCOSIDE HYDROLASE, FAMILY 17, X8 2 469 - -
Tpr6g1138 480 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 2 469 IPR044965 GO:0004553|GO:0005975
Tpr6g1138 480 Gene3D Glycosidases 25 353 - -
Tpr6g1138 480 Pfam X8 domain 367 436 IPR012946 -
Tpr6g1138 480 Pfam Glycosyl hydrolases family 17 26 345 IPR000490 GO:0004553|GO:0005975
Tpr6g1138 480 SUPERFAMILY (Trans)glycosidases 26 345 IPR017853 -
Tpr6g1138 480 Gene3D - 362 461 - -
Tpr6g1138 480 SMART X8_cls 367 450 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1138 Tpr-Chr6 11432765 11436144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1138 5 455 Miscellaneous Gene Families AT1G64760 74.058 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1138 - - gmx:100815300 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1138 6 11432765 11436144 Tpr6g1138 6 11432765 11436144 ECH
Tpr6g1138 6 11432765 11436144 Tpr5g0542 5 8042073 8044091 PCT