Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0542 ATGGCGCAAGAGAACAATGCATTACACATAGCAAGATTCTTCATCTTCATCATCATCATCTTCTTCTTAACTATAATCTCAACTTCATCTGCTTGGGTTGGTGTTAACTGGGGAACAATGACAACACATCAACTTCCACCTAAGAAAGTTGTGAAAATGCTTAAAGAAAATGGGTTTCAAAAATTGAAACTATTTGATGCTGATGATCGCATTATGAATGCTTTAATTGGTACTGATATTGAAGTTATGGTTGCAATTCCAAATATTATGTTGAATATTATTTGTAACAGTCTTAAAGCTTCTGATTCTTGGGTTTTTGAAAATGTCACTGCTTATTTCTTCAGAGGTGGCGTCAATATCAAGTATGTTGCTGTTGGTAATGAGCCATTCCTTAAAGCATATAAGGGTACCTATCTAAATAAAACCCTTCCAGCTCTCAAGAATATACAAACTTCACTCAACAATGCAGGGTTAGGATCAAAGATCAAAGTTACTGTTCCATTCAATGCTGACATTTACTATTCACCAGACTCAAATCCAGTTCCATCAGCAGGTGATTTCAGGCCTGAAGTAAAAGACATCACTGTCGAAATAATCCAATTTCTATATTCAAACAATTCAACTTTCACAGTTAATATCTACCCTTTCCTTAGTCTTTACTATGGAAATGATGTTTTCCCGTTTGATTTTGCATTTTTCGATGGTAAAAACAAATCTCTTAGAGATGGCAATGCTGTTTATAACAATGTTTTCGATGCAAATCTTGATACCCTTATGTGGGCTTTAGACAAAGCAGGTTATCCTGATTTGCATGTTACAGTTGGTGAAGTCGGTTGGCCAACGGATGGCGATAAGAATGCTAATTCCGAAAATGCGAAAAGGTTCAACCAAGGTTTCATTAAACATGCTCTAAGTGGTAATGGTACACCAAAAAGAAAAGGCATGATTGATTTTTATCTATTCAGTCTCATTGATGAAAATGCTAAAAGTGTTGCACCAGGTAATTTTGAGAGGCATTGGGGGATTTTCGAGTTTGATGGAAAACCAAAATATGAATTAGACATAAAAGGTAAACATAACGAAAAGGGTCTTATTGCTGTTGAAGGGATTAAGTACCTTGAAAAGAAGTGGTGTATTTTGGATCCAGAAGCTACTAATTTGGATGAAGATTTAGCTAAAAGTGTTGACTATGCTTGCAGCCAATCTGATTGTACAGCACTTGGCTATGGCTCTAGTTGTAATAATCTAAGTCTTGAAGGCAATGCTTCTTATGCTTTCAATATGTATTATCAAGTTAATAACCAGATGGTTTGGGACTGTGATTTTTCTGGTTTGGCTATTGTTACGCGTGAGGATCCTTCACAGAATGGCTGCCAATTCCCTTTGATGGTCGCTAGCGCTTCGCATTCAGGGCTTTCCAAGATACTGCTGAAAGCAATGGAGGTATATTTTTTTGCTATGTTTTTGCTATAG 1473 0.3632 MAQENNALHIARFFIFIIIIFFLTIISTSSAWVGVNWGTMTTHQLPPKKVVKMLKENGFQKLKLFDADDRIMNALIGTDIEVMVAIPNIMLNIICNSLKASDSWVFENVTAYFFRGGVNIKYVAVGNEPFLKAYKGTYLNKTLPALKNIQTSLNNAGLGSKIKVTVPFNADIYYSPDSNPVPSAGDFRPEVKDITVEIIQFLYSNNSTFTVNIYPFLSLYYGNDVFPFDFAFFDGKNKSLRDGNAVYNNVFDANLDTLMWALDKAGYPDLHVTVGEVGWPTDGDKNANSENAKRFNQGFIKHALSGNGTPKRKGMIDFYLFSLIDENAKSVAPGNFERHWGIFEFDGKPKYELDIKGKHNEKGLIAVEGIKYLEKKWCILDPEATNLDEDLAKSVDYACSQSDCTALGYGSSCNNLSLEGNASYAFNMYYQVNNQMVWDCDFSGLAIVTREDPSQNGCQFPLMVASASHSGLSKILLKAMEVYFFAMFLL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0542 490 Gene3D - 372 470 - -
Tpr5g0542 490 SMART X8_cls 376 460 IPR012946 -
Tpr5g0542 490 SUPERFAMILY (Trans)glycosidases 33 354 IPR017853 -
Tpr5g0542 490 Pfam X8 domain 376 446 IPR012946 -
Tpr5g0542 490 Pfam Glycosyl hydrolases family 17 33 354 IPR000490 GO:0004553|GO:0005975
Tpr5g0542 490 PANTHER O-GLYCOSYL HYDROLASE FAMILY 17 PROTEIN 15 468 - -
Tpr5g0542 490 Gene3D Glycosidases 32 363 - -
Tpr5g0542 490 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 15 468 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0542 Tpr-Chr5 8042073 8044091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0542 15 468 Glycoside Hydrolase AT3G04010 54.405 1.11e-178 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0542 - - gmx:100781894 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g1138 6 11432765 11436144 Tpr5g0542 5 8042073 8044091 PCT