Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0893 ATGTTTTCTCCCTCTGCTCCATTCCCTTCCACAATTCTTCCTTCCTCTTCAGGTATGATGATGCCTCATGAACACGCTGTTCATGCAGTTTCTTATCCGTCTTCTAGTTTTGCTGCTCAGTATTTTCCTACCTCGGTTCTTTTACAAGAGCATCGCGATGAGTATAAGCCTTTACTTCATATGTATAAAGAAGACAAGACATCTCAGGTCACCTTAAATACAAGGGTAATGGATATGGCCTCAGTCTGTGAGAAAAACAATACTGGAGATGTTGATCAGTCGGCACATAACCAAATGCGGAAGTTGCATCTTCGGTGCCATTTGCAGAACCTATTGGCTTATTCGCCGGAAGGGGATTTTGTTTCTTCTTCTTCAACTATGCAACCTGCTGATGATTTCCAATTGGATGCACTTGCTCTTGCTAAGCAAGCCCTATCTGCCTCAAGACAAGCCACTGCAGTGGCTGAAGAATTGGAATTGATTAAAGTTGTTGACAATGATGTTGATTCATTGCCTCTTGGTCTGGACGATTTGTCACTTGGAAAGAACAAAATCGTGAGGTCAATACGGCTTAAAGAAAGGCGATCTAAACAGAGAAAAGTGTCAATGTCAAAAGTTTTTTATGAAGAAAAGCACCTGACCAGAAAGTCCGATGTACAAAGAAGGTTACGTGTAGAGAAAAAGTTAAAAGAAGGGCTTGATGGAAACGACGCCCTGCGCTTGTTCTTACGGAGTCCTGAAACAAAGAAACTTTTGAACCTTGAAGAAGAGTCTCAATTGTTTGTTCAGATACAGGAATTATTTAAATTGAAAGAAAAAAAGATCGAGCTTCAATCTCAGTTTGGGAGGGAACCAACTTTTGCCGAATGGGCAGATGGTGTGGGCCTTAGCTGTCGTACCCTTCAGACACAGCTTCATTCTGGTAACAGAAGTAAAGATAAGCTAGTTCATGCCAATTTACGCCTTGTAGCTCACATTGCCAAATATTATCAGGGGCGTGGTCTCGACTTTCAAGACTTATTGCAGGCGGGAAGTGTGGGCCTTGTGAAGAGTGTCGAAAAGTTCAAACCCCTAGCTGGTTGCCGGTTCAGTAGTTATGCTTACTTCTGGATAAGGCAAACAATAAGGAAGGCCTTATTTCTCCATTCCAAAACAATCAGTTTGCCGGTGAACCTCTACACCCTTTTGGGAAAGGTTTCGGAAGCAAAGAAATTGTACATTAAAGAAGGAAATCTTCAGCCCACCACAGAAGAAATAGCAAAACAAGTAGGAATTACAGTAGATAAGTTGGAAATGTTGCTATTTTGTACAAGAACTCCAGTTTCGATGGAGCAACCGGTGTGGGCAGACCAGGATACAACATTCCAGGAGATTACTGCAGACTCTGCAATTGAAATCCCAAATGTATGTGTTTCAAAACAACTAATGAGGAGTCATGTACACAACCTCTTAAATATTTTGAGCCCAAAAGAAAGGAGGGTAATCAGATTAAGATTTGGTATTGAAGATGGCTATGAGAAATCTCTGTTAGAAGTTGGTAAGGTGGTGGGTGTGTGTAAGGAAAGGGTCAGACAGTTAGAGAGCAATGGGTTGAACAAGCTCAAGCAGTCCATTGTTAGTCAACAGCTTGATGCATATGTAGACATGATTGTATAG 1656 0.4155 MFSPSAPFPSTILPSSSGMMMPHEHAVHAVSYPSSSFAAQYFPTSVLLQEHRDEYKPLLHMYKEDKTSQVTLNTRVMDMASVCEKNNTGDVDQSAHNQMRKLHLRCHLQNLLAYSPEGDFVSSSSTMQPADDFQLDALALAKQALSASRQATAVAEELELIKVVDNDVDSLPLGLDDLSLGKNKIVRSIRLKERRSKQRKVSMSKVFYEEKHLTRKSDVQRRLRVEKKLKEGLDGNDALRLFLRSPETKKLLNLEEESQLFVQIQELFKLKEKKIELQSQFGREPTFAEWADGVGLSCRTLQTQLHSGNRSKDKLVHANLRLVAHIAKYYQGRGLDFQDLLQAGSVGLVKSVEKFKPLAGCRFSSYAYFWIRQTIRKALFLHSKTISLPVNLYTLLGKVSEAKKLYIKEGNLQPTTEEIAKQVGITVDKLEMLLFCTRTPVSMEQPVWADQDTTFQEITADSAIEIPNVCVSKQLMRSHVHNLLNILSPKERRVIRLRFGIEDGYEKSLLEVGKVVGVCKERVRQLESNGLNKLKQSIVSQQLDAYVDMIV* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0893 551 Pfam Sigma-70 region 2 315 379 IPR007627 GO:0003700|GO:0006352|GO:0006355
Tpr6g0893 551 Gene3D - 465 548 IPR036388 -
Tpr6g0893 551 Gene3D - 141 384 - -
Tpr6g0893 551 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 388 461 IPR013324 -
Tpr6g0893 551 CDD Sigma70_r4 477 535 - -
Tpr6g0893 551 ProSitePatterns Sigma-70 factors family signature 1. 339 352 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr6g0893 551 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 313 537 IPR014284 GO:0003700|GO:0006352|GO:0006355
Tpr6g0893 551 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 10 550 - -
Tpr6g0893 551 Pfam Sigma-70, region 4 483 536 IPR007630 GO:0003700|GO:0006352|GO:0006355
Tpr6g0893 551 Gene3D - 388 464 IPR036388 -
Tpr6g0893 551 PRINTS Major sigma-70 factor signature 339 352 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr6g0893 551 PRINTS Major sigma-70 factor signature 363 371 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr6g0893 551 PRINTS Major sigma-70 factor signature 487 499 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr6g0893 551 PRINTS Major sigma-70 factor signature 508 523 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr6g0893 551 PRINTS Major sigma-70 factor signature 523 534 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr6g0893 551 Pfam Sigma-70 region 3 396 467 IPR007624 GO:0003700|GO:0006352|GO:0006355
Tpr6g0893 551 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 10 550 - -
Tpr6g0893 551 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 446 547 IPR013324 -
Tpr6g0893 551 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 235 383 IPR013325 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0893 Tpr-Chr6 7814569 7819198 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0893 - - gmx:100793539 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0893 6 7814569 7819198 Tpr6g0893 6 7814569 7819198 ECH
Tpr6g0893 6 7814569 7819198 Tpr1g3931 1 43538083 43543809 PCT