Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3931 ATGGAATCTGCAAAGACTATGTTTTGTTCTTCTCAACCGTTTCCTCCAAGAATTCACCACTGGAACACTCTTCCTTCTTATACTTCTGTTTTGATGCTCCGGGAACAAGTTGCGCCTACAGTCACCTCCTGGTGTACTAGCTTTTCAGCTCAGAATTTTCCTACTTCGGTTCTTTTACAAGAGCAGTGTGATGAGTATAGGCCTCCATTGCACATTTCTAAGAAAGACAAGACATGTCAGGCAACATTAAATACAAAGCAGATGGATATGGTCTCTGTTCATGAAGACAATGACACCAGCAACGTTGATCAGGTAGCACGTGACTTCAGGAAGCACCTGCATCTCTTGCCTCATTTAGAAAACTTATTAAGTTCCTCGCAAACAGGAGAAGTGGATGCTTCTTTAACTCTACAGCTTGCAGATAGTTTGCAATGTAATGCAGTTTCTCCCACAAAACACGCAGCCTCAGTAGCTGAAAACTTGAGATCAATTAAAGCTGATGAGGATGCTGACAATTCAATATCTTCTGGTTTAGCCTCTTCTTCCATTTTGGCTGAACCTTCACTTGGAAGAAATAAAACCGTAAGGTCAACACGACATCGAGAGAGACGAGCAAAAGAGAGAAAGGTACCGAAGTCAAAAGTTAAAGACAACGAAACTTACCTTGTCGGAAAGGATTCTAGACAGGAAAAACTACACGTACAAAAGAAGATAAATAAAGGATTGAATCAAAATGGTCTGTTGAAATCATTCTTGCAGAGTCCTGAAGCAAAACAACTTTTAACTTCTGAACAAGAGTGTCAGTTGGTTGCTCAGATACAGGACCTATTGAGATTGGAAGAATTGAAGACAAGTCTTCAATCTCAATTTGGAAGGGAACCAACTTTAGCTGAATGGGCCGAGGGTGCAGGGCTTAACTGTCGGAAACTAAAGGCACAACTTCGTTGTGGTAACAGAAGCAGAGAAAAATTGATTCAAGCAAATGTACGCATGGTACACTATGTTGCTAAAAGTTACCAAGGGCGTGGTCTCAGCCTCGAGGACTTATTACAGGAGGGACGTACAGGTCTCATAAAGAGTGTTAAAAAGTTTAAACCTCTATCTGGGTCCCGATTTGCTACTTATTCATATTGGTGGATTAAACAAGCAATAAGGAAGGCCATATACAATCATTCCAGGACAATCCGTTTACCGGAAAAGGTATTTAACAAACTTAGCAAGGTAATGGAGGCAAAGAAATTGTATATGGAAGAGGGAAATCTTAACCCAAGCAAAGAAGAATTAGGAAGAAGGGTTGGAATGACAGCAGGCAAGGTTGAAAGTTTGTTATTTGTTGCAAGAACTCCAATTTCTATGCAGAAAACTGTGGGAGCTGATACGGATACAATTTTGCAGGAGATTACTGAAGACACTGCAATTGAGAGCCCAAACATGAGTGTTTCAAAACAGCTTATGAGACGACATGTGCTCAATGTCTTAAATAAATTACGCCCTAAAGAAAGAAGGATAATTCGACTAAGATTTGGTTTCGAGGATGGAGAAGAAAGATCTTTATCAGAAATCGGAGAAATATTTGGCTTGTCTAGAGAAAGGATTCATCAGTTGGAGAACCGGGCACTCTACAGGCTCAAAAAGTGTCTTGTCAGTCAAGGACTTGATGCTTATGCAGACAAGCTTATATAG 1683 0.404 MESAKTMFCSSQPFPPRIHHWNTLPSYTSVLMLREQVAPTVTSWCTSFSAQNFPTSVLLQEQCDEYRPPLHISKKDKTCQATLNTKQMDMVSVHEDNDTSNVDQVARDFRKHLHLLPHLENLLSSSQTGEVDASLTLQLADSLQCNAVSPTKHAASVAENLRSIKADEDADNSISSGLASSSILAEPSLGRNKTVRSTRHRERRAKERKVPKSKVKDNETYLVGKDSRQEKLHVQKKINKGLNQNGLLKSFLQSPEAKQLLTSEQECQLVAQIQDLLRLEELKTSLQSQFGREPTLAEWAEGAGLNCRKLKAQLRCGNRSREKLIQANVRMVHYVAKSYQGRGLSLEDLLQEGRTGLIKSVKKFKPLSGSRFATYSYWWIKQAIRKAIYNHSRTIRLPEKVFNKLSKVMEAKKLYMEEGNLNPSKEELGRRVGMTAGKVESLLFVARTPISMQKTVGADTDTILQEITEDTAIESPNMSVSKQLMRRHVLNVLNKLRPKERRIIRLRFGFEDGEERSLSEIGEIFGLSRERIHQLENRALYRLKKCLVSQGLDAYADKLI* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3931 560 MobiDBLite consensus disorder prediction 185 216 - -
Tpr1g3931 560 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 397 470 IPR013324 -
Tpr1g3931 560 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 456 555 IPR013324 -
Tpr1g3931 560 ProSitePatterns Sigma-70 factors family signature 2. 517 543 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr1g3931 560 Pfam Sigma-70 region 3 404 479 IPR007624 GO:0003700|GO:0006352|GO:0006355
Tpr1g3931 560 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 320 547 IPR014284 GO:0003700|GO:0006352|GO:0006355
Tpr1g3931 560 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 4 560 - -
Tpr1g3931 560 MobiDBLite consensus disorder prediction 194 210 - -
Tpr1g3931 560 Pfam Sigma-70 region 2 324 393 IPR007627 GO:0003700|GO:0006352|GO:0006355
Tpr1g3931 560 Gene3D - 475 547 IPR036388 -
Tpr1g3931 560 Gene3D - 397 474 IPR036388 -
Tpr1g3931 560 PRINTS Major sigma-70 factor signature 348 361 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr1g3931 560 PRINTS Major sigma-70 factor signature 372 380 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr1g3931 560 PRINTS Major sigma-70 factor signature 496 508 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr1g3931 560 PRINTS Major sigma-70 factor signature 517 532 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr1g3931 560 PRINTS Major sigma-70 factor signature 532 543 IPR000943 GO:0003700|GO:0006352|GO:0006355
Tpr1g3931 560 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 4 560 - -
Tpr1g3931 560 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 245 394 IPR013325 GO:0003700|GO:0006352|GO:0006355
Tpr1g3931 560 CDD Sigma70_r4 486 544 - -
Tpr1g3931 560 Gene3D - 218 393 - -
Tpr1g3931 560 Pfam Sigma-70, region 4 492 545 IPR007630 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3931 Tpr-Chr1 43538083 43543809 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3931 - - gmx:100306289 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3931 1 43538083 43543809 Tpr1g3931 1 43538083 43543809 ECH
Tpr6g0893 6 7814569 7819198 Tpr1g3931 1 43538083 43543809 PCT