Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0577 ATGGATCACTCATTCCCTCAGAAAGTTCTAGAACACCTATTTTCATTCATTGATTCCAACAAAGACCGAAACGCAATCTCTCTAGTATCCAAATCATGGTACGAGATCGAACGGCGAAGCAGGAAGAAAATCTTCATCGGAAACTGCTACGCCGTTAGTCCTACAACAGTGATCAAACGATTCCCGGAGTTAAGATCCATTACGTTGAAAGGGAAGCCACACTTCGCCGACTTCAATTTAGTACCCGACGGTTGGGGCGGTTACGTCTATACTTGGATTGAAGCCATGGCTGTTAGCGTTCCTTTGCTTGAAGAGATTCGATTGAAGAGGATGGTTGTAACAGATGAGAGCTTGGAGCTTATAGCTAAATCGTTCAAGAATTTCAAAGTGTTGGTTTTTATTTCGTGTGATGGTTTTTCTACTGATGGACTTGAAGCCATTGCTTCCAATTGCAGGAATTTGAAGGAGTTGAACTTGCAGGAGAGTGAAGTGGAGGACCTTAGTGGGGATTGGCTATGCTATTTCCCTGATTCCTACACATCATTAGTTTCACTTAATATCTCTTGCTTGAACAATGAGGTGAATTTGTCTGCACTAGAGGCCCTGCTTGGTAGGTGTCCCAACCTCCAGACTCTCTGTCTCAATCATGCTGTGCCCCTTGATAAACTTCCCAGCTTACTTAGCCAATGTCCTCAGCTGGTTGAGTTAGGCACAGGAGTCTACTCAACCGAGGAGATGCATCCAGACGTCTTGTCAAGCCTAATAACAGCATTTTCTGGGTGCAAGCAATTGAAGAGCTTGTCTGGCTTTTGGAATGTCCTGCCATCCTACCTTCCGGCATTATACCCGATATGCTCTAGGCTAACATCACTAAACCTGAGTTATGCTATCATTCAAAGCTCTGATATTGTCAAACTTATCGGTCAATGCCCCAATTTGTTGCGGTTATGGGTGCTTGATTACATAGAAGATGTTGGTCTTGAAGCTGTTGCTGCTTCATGCAAGGATCTACAAGAGTTGAGGGTGTTTCCATCTGACCCATCTTGCTTAGAACTAAATAATGCATTGACAGAAAGGGGTCTCGTCTCTGTATCTAAAGGCTGCCCAAAGCTCCAGTCAGTTCTATACTTTTGTCGACAAATGTCGAATGCTGCTCTTAGTGCTATTGCACAGATTAGGCCTAATTTGACCCGTTTTCGCCTATGTATTCTTGAGCCTCATACTCCTGACTATCTTACCCTTCAACCACTGGATTCTGGTTTTGGAGCTATTGTTGAGCATTGCAAGGACCTTCAGCGCCTTTCCCTTTCTGGTCTTCTTACAGATCGTGTTTTTGAGTATATTGGAACTCATGCGAAGAAGCTGGAAATGCTATCTGTTGCTTTTGCTGGAGATAGCGATTTGGGTCTCCATTATGTGCTGTCTGGGTGTGAGAATCTTAGGAAGCTAGAGATTAGGGACTGCCCCTTTGGTGACGAGGCCCTTTTGGCCAATGCTGCAAAACTAGAGACAATGCGGTCCCTTTGGATGTCCTCTTGCTCAGTGAGTTATGGAGCGTGTAAGTTACTTGGTCAGAAAATGCCCAAACTTAACGTTGAAGTCATTGATGAAAGTGGGCCTCCAGATTCAAGACCTGATAGTTGTCCTGTTGAGAAGCTTTATATATACAGGAGTATTGCCGGGCCAAGATTGGACATGCCTGGTTTTGTCTGGACAATGGGGGATGATTCTTCACGAAAGCTCGAGCTTGACGTGGCAGGAGTAGAAGCTCAGTTTAGAAATCTCTGA 1788 0.4452 MDHSFPQKVLEHLFSFIDSNKDRNAISLVSKSWYEIERRSRKKIFIGNCYAVSPTTVIKRFPELRSITLKGKPHFADFNLVPDGWGGYVYTWIEAMAVSVPLLEEIRLKRMVVTDESLELIAKSFKNFKVLVFISCDGFSTDGLEAIASNCRNLKELNLQESEVEDLSGDWLCYFPDSYTSLVSLNISCLNNEVNLSALEALLGRCPNLQTLCLNHAVPLDKLPSLLSQCPQLVELGTGVYSTEEMHPDVLSSLITAFSGCKQLKSLSGFWNVLPSYLPALYPICSRLTSLNLSYAIIQSSDIVKLIGQCPNLLRLWVLDYIEDVGLEAVAASCKDLQELRVFPSDPSCLELNNALTERGLVSVSKGCPKLQSVLYFCRQMSNAALSAIAQIRPNLTRFRLCILEPHTPDYLTLQPLDSGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGTHAKKLEMLSVAFAGDSDLGLHYVLSGCENLRKLEIRDCPFGDEALLANAAKLETMRSLWMSSCSVSYGACKLLGQKMPKLNVEVIDESGPPDSRPDSCPVEKLYIYRSIAGPRLDMPGFVWTMGDDSSRKLELDVAGVEAQFRNL* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0577 595 Pfam F-box 4 43 IPR041567 -
Tpr6g0577 595 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 3 574 - -
Tpr6g0577 595 Pfam Transport inhibitor response 1 protein domain 62 108 IPR041101 -
Tpr6g0577 595 SMART LRR_CC_2 368 392 IPR006553 -
Tpr6g0577 595 SMART LRR_CC_2 100 124 IPR006553 -
Tpr6g0577 595 SMART LRR_CC_2 477 501 IPR006553 -
Tpr6g0577 595 SMART LRR_CC_2 310 333 IPR006553 -
Tpr6g0577 595 SMART LRR_CC_2 428 451 IPR006553 -
Tpr6g0577 595 SMART LRR_CC_2 125 150 IPR006553 -
Tpr6g0577 595 SUPERFAMILY RNI-like 65 531 - -
Tpr6g0577 595 Gene3D - 1 41 - -
Tpr6g0577 595 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 3 574 - -
Tpr6g0577 595 Gene3D Ribonuclease Inhibitor 42 573 IPR032675 -
Tpr6g0577 595 SMART fbox_2 5 46 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0577 Tpr-Chr6 4700682 4704144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0577 175 320 Receptor kinase-like Gene Family AT1G28440 31.081 8.25e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0577 K14485 - gmx:100816241 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0577 6 4700682 4704144 Tpr1g1267 1 11379183 11382272 PCT