Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1267 ATGCAACGAGTAGCGTACTCTTTCCCCGAAGAAGTTCTCGAGCATGTGTTCTCATTCATTGAATCAACAACTGACAGAGGCTCGATCTCGTTGGTATGTAAATCATGGTACGAGATCGAGCGGTGGTGTAGAAAGAGAATCTTCGTCGGAAACTGTTATGCGGTGAGTCCGGCGATGGTGATAAAACGGTTTCCGAAACTGAGATCTATAACACTGAAAGGGAAACCACACTTTGCTGACTTCAATTTAGTACCTGAAGGTTGGGGTGGTTATGTTTGTCCTTGGATCAAAGCTATGGCTGTTGCTTATCCTTGTTTGGAAGAGATTAAGCTTAAGAGAATGATAATTAGTGATGATTGTTTGGATCTTATTGCTAAATCTTTTAAGAATTTCACTGTTTTGGTTCTTACTTCTTGTGAAGGTTTCACTACTGATGGACTTGCTGCCATTGCTGCCAATTGCAGGAATTTGAGGGAGTTGGACTTGCGGGAGAGTGAAGTGGAGGACATTTGTGGTCATTGGCTAAGTCATTTTCCTGATTCATACACATCATTGGTTTCTCTAAACATCTCTTGTTTAGCAAATGAGGTGAATTTTCCTGCACTAGAGCGCCTGGTTAGTAGGTGTCCTAACTTGCAGACTCTCCGCCTCAATCGTGCTGCGCCCCTTGATAAGCTTGCCAATCTTCTTCGTGGGGCTCCTCAGCTGGTTGAGTTAGGTACTGGAGCCTACACGAGCGAGATGCGGCCAGATGTCTTTTCAAACCTGACAACAGCATTTTCTGGGTGCAAGCAAATGAAGAGCTTGTCCGGCTTTTGGGATGTGCTCCCATCCTACCTTCCTGCAGCATATCCAGTATGCTCTAGACTCACTTCACTAAACTTGAGTTATGCTACAATCCAAAGCCCGGATCTTATCAAGCTTGTTGGTCAATGCCAGAGTTTGCAGCGCTTATGGGTGCTGGATTACATAGAAGATGCTGGCCTTGACATGCTTGCTGCAACGTGTAAGGACCTGAGGGAGTTGAGAGTGTTTCCTTCGGACCCATTTGGGTTGGAACTAAATGTAGCACTGACTGAGCAGGGCCTTGTTTCTGTGTCTGAAGGTTGTCCCAAGCTCCATTCAGTTCTATATTTTTGTCGTCAAATGACCAATGCGGCACTAAATATAATTGCTCGGAACAGGCCTAATATGACTCGTTTTAGACTCTGTATTATTGAGCCTCGAACTCCTGACTATCTTACCCTTCAACCTTTGGATGCTGGTTTTGGAGCTATTGTCGAGCATTGTAAGGGCCTTCAGCGCCTTTCCCTTTCAGGGCTTCTTACTGACCGTGTTTTTGAGTATATTGGGACTCATGCTAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCTGGAGATAGTGATCTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCTCTTTTAGCCAACGCTGCAAAGTTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTCAGTGAGTTTTGGAGCATGTAAACTGTTGGGACAGAAGTTGCCCAGGCTCAATGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCAGATAGCAGTCCTGTTGAGAAGCTATACATATACAGGACCATTTCTGGGCCTAGATTGGACATGCCTGGTTATGTATGGACAATGGAAGATGATTCTTGCATATCTTGA 1749 0.4534 MQRVAYSFPEEVLEHVFSFIESTTDRGSISLVCKSWYEIERWCRKRIFVGNCYAVSPAMVIKRFPKLRSITLKGKPHFADFNLVPEGWGGYVCPWIKAMAVAYPCLEEIKLKRMIISDDCLDLIAKSFKNFTVLVLTSCEGFTTDGLAAIAANCRNLRELDLRESEVEDICGHWLSHFPDSYTSLVSLNISCLANEVNFPALERLVSRCPNLQTLRLNRAAPLDKLANLLRGAPQLVELGTGAYTSEMRPDVFSNLTTAFSGCKQMKSLSGFWDVLPSYLPAAYPVCSRLTSLNLSYATIQSPDLIKLVGQCQSLQRLWVLDYIEDAGLDMLAATCKDLRELRVFPSDPFGLELNVALTEQGLVSVSEGCPKLHSVLYFCRQMTNAALNIIARNRPNMTRFRLCIIEPRTPDYLTLQPLDAGFGAIVEHCKGLQRLSLSGLLTDRVFEYIGTHAKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFGACKLLGQKLPRLNVEVIDERGPPDSRPDSSPVEKLYIYRTISGPRLDMPGYVWTMEDDSCIS* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1267 582 Gene3D - 1 44 - -
Tpr1g1267 582 PANTHER PROTEIN TRANSPORT INHIBITOR RESPONSE 1 5 576 - -
Tpr1g1267 582 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
Tpr1g1267 582 SMART fbox_2 8 49 IPR001810 GO:0005515
Tpr1g1267 582 Pfam F-box 6 46 IPR041567 -
Tpr1g1267 582 SUPERFAMILY F-box domain 7 42 IPR036047 GO:0005515
Tpr1g1267 582 SMART LRR_CC_2 154 191 IPR006553 -
Tpr1g1267 582 SMART LRR_CC_2 128 153 IPR006553 -
Tpr1g1267 582 SMART LRR_CC_2 430 453 IPR006553 -
Tpr1g1267 582 SMART LRR_CC_2 479 503 IPR006553 -
Tpr1g1267 582 SMART LRR_CC_2 370 394 IPR006553 -
Tpr1g1267 582 Gene3D Ribonuclease Inhibitor 45 575 IPR032675 -
Tpr1g1267 582 Pfam Leucine Rich repeat 287 308 IPR001611 GO:0005515
Tpr1g1267 582 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 5 576 - -
Tpr1g1267 582 SUPERFAMILY RNI-like 58 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1267 Tpr-Chr1 11379183 11382272 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1267 K14485 - gmx:100809794 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1267 1 11379183 11382272 Tpr1g1267 1 11379183 11382272 ECH
Tpr6g0577 6 4700682 4704144 Tpr1g1267 1 11379183 11382272 PCT