Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0563 ATGGGAGTTGTAACTCTTGGTGAATTGAAGCCTAGTGTTTCAGGAAGAAGAACTTTTCGTCCAAGTTCAAGCATAAGACATGCCACTGAATGGCCAATTTCTGATGTTTCTAGTGATCTTACCATCCAAATAGGAGCATCAACCTTTTCACTTCATAAGTTTCCTCTTGTTTCTAGGAGTGGAAGATTTAGGAAGCTTCTATCAGAAGTAAAAGATTCAAAAGTTCCGCGCGTAAGTCTTCCAACTGTGCCAGGTGGCATAGAGGCATTTGAACTAGCTGCAAAATTCTGTTATGGAATCAACATTGATTTCACTCTCTCAAATATTGCTATGCTACATTGCACATCACATTTTCTTGAAATGACAGAAGAATTTTCAGAAAAGAATTTGGTGACAAGAGCTGAATCATATCTAAAAGAAATAGTACTTCCAAACACATCAAGCATTATAAATGTTCTTCACCAATGTGAAAATCTTGTTCCTTTAGCAGAAGAAATAAACCTTGTTAATAGGCTAATTAACGCAATTGCGAATAATGCATGCAAAGAGCAACTTACTTCTGGTTTGTTAAAACTTGATCACACTTTTCCTTCTAAAACAACATCAATGATGGAACCAGAAACACCGTCGGATTGGTGGGGGAACTCGTTAAATGTTCTTAGTCTTGATTTCTTTGAACGTGTTGTATCGGTTATGAAATCGAAGGGATTAAAACAAGAGTTGATCAGCAAAATTTTGGTAAACTATGCACATAATTCTCTTCAAGGGATTACCAGTGTTAGTTCACTTGACATAGAATTGCAAAAGAAACAAAAGGTTATTGTCGAAACTATAGTTCGGTTACTACCAACTCAATCAAGGAAAAGTCCAATTCCAATGGCGTTTCTATCATGTTTATTGAAAACTGCGATAGCAACATCAGTATCAACTTCTTGTAAATGTGATCTGGAGAGGCGTATCGGTCTACAACTCGATCAGGCAATCCTCGAAGACATACTTATTCCAACGAATTTGCCTTCAAATACTCACAACATAATGTATGATATAGATTCAATTTTGAGAATCTTTTCTACATTTCTAAACTTAGATGATGTGGATGATGAAGACAGTGATTTCAGAGATGAAAGCCAGATGATGTATGAGTATGAATTTGACAGTCCCGGATCGCCAAAACAAAGCTCAATTCTTAAGGTATCGAAATTACTAGACAATTTTCTTGCTGAAGTAGCACTAGACTTGAACCTTTTGCCATCAAAATTCATAGCACTTGCCGAACTTCTTCCGGATCATGCTCGTGTTACAAGCGATGGACTTTATAGAGCTGTTGATATCTTCCTTAAGGTTCATCCGAACATTAAGGACTCTGAGCGGTATCGCCTAAGCAAAACAATCGATTGTCAGAAACTATCTCAAGAAGCATGCAGTCATGCAGCACAAAACGAAAGGCTACCGGTACAAATAGGGGTACAAGTTCTATACTATGAACAAATAAGGCTTCGAAACGCGATGAATGGAGGACACAATCAAATCTTGTTTGGTGGAATTCATGGTCAATTTCCTCAAAGATCAGGGAGTGGTATAGGAAGTGGAGCAATTTCGCCTAGAGATAACTATGCATCGGTAAGAAGAGAGAATCGAGAGCTGAAGCTTGAAGTTACAAGAATGAGAATGAGGTTGAATGATTTGGAGAAAGATCATGTTTCTATGAAGCAAGAACTTGTGAAGACACATCCTGCACACAAATTCTTCAAATCATTTGCCAAAAAACTAAGCAAATTAAATGCAATATTTCGTATTAACAGTACTCGTGGCAGTGGAACCGGAAGGTCTAGTTCGCAAACTCAAACTTGGTTTCCTTTTCAAAGGAGAAGGTGTCACTCAGTTTCATGA 1890 0.3762 MGVVTLGELKPSVSGRRTFRPSSSIRHATEWPISDVSSDLTIQIGASTFSLHKFPLVSRSGRFRKLLSEVKDSKVPRVSLPTVPGGIEAFELAAKFCYGINIDFTLSNIAMLHCTSHFLEMTEEFSEKNLVTRAESYLKEIVLPNTSSIINVLHQCENLVPLAEEINLVNRLINAIANNACKEQLTSGLLKLDHTFPSKTTSMMEPETPSDWWGNSLNVLSLDFFERVVSVMKSKGLKQELISKILVNYAHNSLQGITSVSSLDIELQKKQKVIVETIVRLLPTQSRKSPIPMAFLSCLLKTAIATSVSTSCKCDLERRIGLQLDQAILEDILIPTNLPSNTHNIMYDIDSILRIFSTFLNLDDVDDEDSDFRDESQMMYEYEFDSPGSPKQSSILKVSKLLDNFLAEVALDLNLLPSKFIALAELLPDHARVTSDGLYRAVDIFLKVHPNIKDSERYRLSKTIDCQKLSQEACSHAAQNERLPVQIGVQVLYYEQIRLRNAMNGGHNQILFGGIHGQFPQRSGSGIGSGAISPRDNYASVRRENRELKLEVTRMRMRLNDLEKDHVSMKQELVKTHPAHKFFKSFAKKLSKLNAIFRINSTRGSGTGRSSSQTQTWFPFQRRRCHSVS* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0563 629 Coils Coil 538 572 - -
Tpr6g0563 629 Pfam NPH3 family 211 474 IPR027356 -
Tpr6g0563 629 SUPERFAMILY POZ domain 22 123 IPR011333 -
Tpr6g0563 629 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 617 - -
Tpr6g0563 629 Pfam BTB/POZ domain 37 138 IPR000210 GO:0005515
Tpr6g0563 629 PANTHER OS12G0117600 PROTEIN 25 617 IPR043454 -
Tpr6g0563 629 Gene3D Potassium Channel Kv1.1; Chain A 19 169 IPR011333 -
Tpr6g0563 629 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Tpr6g0563 629 ProSiteProfiles NPH3 domain profile. 211 498 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0563 Tpr-Chr6 4553197 4557234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0563 1 448 EF-hand Containing Proteins AT2G47860 57.531 2.16e-178 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0563 - - zju:107406883 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0563 6 4553197 4557234 Tpr1g1274 1 11452718 11457826 PCT