Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1274 ATGGGAGTTGTCACTGTTGGAGAATATAAGCCTAGCATTTCTGGGAAGAGGACCTTTCGTCCAAGTTCTAGCATAAGACATGCAACTGAATGGCCAATATCTGATGTCTCTAGTGATCTTACCATCGAAGTCGGAGCTTCAAGCTTTGCACTTCACAAGTTTCCTCTAGTTTCTAGGAGTGGAAGAATTAGAAAACTTTTGTTAGAATCAAGAGATTCGAAAGTTTCGCGCATAAGTCTACCAAGTGTACCAGGTGGTGCAGAGGCATTCGAGCTAGCTGCAAAATTCTGTTATGGAGTTAACATTGAGATCACTCTCTCCAATGTTGCTATGCTAAGATGCATAGCTCATTTTCTAGAAATGACAGAAGACTTTGCCGAGAAAAACTTGTTGACGCGAGCCGAATCATATCTAAAAGAGACAGTGCTCTCAAACATAGCAAACTCAATATCTGTTCTTCACCGTTGCGAAACTCTCCTACCTTTTTCAGAAGAGATTGGCCTTGTTAACAGACTAATCAATGCAATTTCAAGTAATGTGTGCAAAGAGGAACTTACTTCTGGTTTGCAAAAACTAGACTATAATTTCCCTTCTAAAACCATTGAACCTGAAACACCTTCACAATGGTGGGGAAAATCTCTTACTGTTCTTAACCTTGATTTCTTCAAACGAGTTTTATCCGCGATGAAGTCAAAAGGACTAAAACAAGACATTATCAGCAAAATTTTGATAAACTATGCACATAATTCTCTTCAAGTAGTCAAAGGAAGCTTACTTGACTTGGAAGTTTTGAAGAATCAAAGGATTCTTGTTGAAACAATAACTAGTTTATTACCAACTCAATCAAGGAAAAGCCAAGTTCCAATAGCTTTTCTCTCAAGTTTGTTGAAATCTTCAATAGCAACTTCAGCATCTACTTCTTGTAGATCGGATTTGGAGAAGCGGATCGGTCTACAACTTGACCAAGCAATTCTTGAAGACATTCTGATTCCAACAAGTTCGTATCAGAATAATAACCGTTGCAGTACTATTTACGATACAGATTCAATTGTGAGGATTTTTTCGATTTTTCTTAACTTGGATGAAGAGGATGAGGACGATAGCCGGATGCGAGATGAAAATGAAATGGTTTATGATTTTGATAGCCCTGGATCTCCAAAACAAAGCTCAATTCTTAAGGTATCCAAATTGCTGGACAATTATCTTGCTGAAGTTGCATTAGACCCAAACTTGTTTCCATCAAAGTTCATTTCACTCGCTGAATTGCTTCCCGATCATGCACGTATTTTAAGCGATGGACTTTATAGAGCAGTCGATATCTTCCTCAAGGTTCATCCAAACATAAAGGAATCCGAGCGATACCGGTTATGCAAAACCATAGATTGCCAAAAACTGTCACAAGAAGCATGCAGCCATGCAGCACAAAATGAAAGACTACCAGTTCAAATGGCAGTACAAGTTCTATACTTCGAACAAATCCGTCTTCGCAACGCCATGAATGGAGGACACAATCAATTACTCTTTGGTGGACTAAATGGTCAATTCCCTCAACGTTCAGGTAGTGGTGCAGGAAGTGGAGCAATGTCACCTAGAGATAACTATGCATCAGTTAGAAGAGAGAATCGAGAACTGAAACTCGAAGTAACAAGAATGAGAATGAGACTCACCGATTTGGAGAAAGATCATGTTTCTATGAAACAAGAACTTGTTAAGTCTCATCCTGCTAATAAGCTCTTCAAATCATTTACTAAAAAACTAAGCAAGCTTAATGCATTGTTTAGGATTAATGGTATTAAGGCTAATGGTGTTGGTTTTGAGAGAAGGTTCCCTTTTCCTAAAAGAAGACGTCATTCAGTTTCTTGA 1863 0.3849 MGVVTVGEYKPSISGKRTFRPSSSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSRSGRIRKLLLESRDSKVSRISLPSVPGGAEAFELAAKFCYGVNIEITLSNVAMLRCIAHFLEMTEDFAEKNLLTRAESYLKETVLSNIANSISVLHRCETLLPFSEEIGLVNRLINAISSNVCKEELTSGLQKLDYNFPSKTIEPETPSQWWGKSLTVLNLDFFKRVLSAMKSKGLKQDIISKILINYAHNSLQVVKGSLLDLEVLKNQRILVETITSLLPTQSRKSQVPIAFLSSLLKSSIATSASTSCRSDLEKRIGLQLDQAILEDILIPTSSYQNNNRCSTIYDTDSIVRIFSIFLNLDEEDEDDSRMRDENEMVYDFDSPGSPKQSSILKVSKLLDNYLAEVALDPNLFPSKFISLAELLPDHARILSDGLYRAVDIFLKVHPNIKESERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGHNQLLFGGLNGQFPQRSGSGAGSGAMSPRDNYASVRRENRELKLEVTRMRMRLTDLEKDHVSMKQELVKSHPANKLFKSFTKKLSKLNALFRINGIKANGVGFERRFPFPKRRRHSVS* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1274 620 Pfam NPH3 family 208 470 IPR027356 -
Tpr1g1274 620 Gene3D Potassium Channel Kv1.1; Chain A 24 146 IPR011333 -
Tpr1g1274 620 SMART BTB_4 38 130 IPR000210 GO:0005515
Tpr1g1274 620 SUPERFAMILY POZ domain 22 123 IPR011333 -
Tpr1g1274 620 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 597 - -
Tpr1g1274 620 Coils Coil 534 561 - -
Tpr1g1274 620 Pfam BTB/POZ domain 37 123 IPR000210 GO:0005515
Tpr1g1274 620 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Tpr1g1274 620 PANTHER OS12G0117600 PROTEIN 25 597 IPR043454 -
Tpr1g1274 620 ProSiteProfiles NPH3 domain profile. 208 494 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1274 Tpr-Chr1 11452718 11457826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1274 1 444 EF-hand Containing Proteins AT2G47860 58.071 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1274 - - mtr:MTR_1g088885 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1274 1 11452718 11457826 Tpr1g1274 1 11452718 11457826 ECH
Tpr6g0563 6 4553197 4557234 Tpr1g1274 1 11452718 11457826 PCT