Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0503 ATGGCCTTCACAACCACAATGCTCTCATGGAGTGTTATTGAGTTCGGTGGGGTGATGAAAACTGAATTGGAGAATGCAAGAGAGGCCATTCGTTGGGGCACTAATTATCACCTCAAAGCCACTGCATATCCAGACACTATTTATGTTCAGGTGGGAGATGCCGACAAAGATCACGCTTGTTGGGAGAGACCAGAGGATATGGATACTCCAAGAAATGTGTATAAGATAGATAGAAACAATCCCGGATCTGATGTGGCTGCTGAAACTGCTGCTGCTCTTGCTGCTGCTTCTATAGTTTTCAGAAAAATTGACCCCATTTACTCAAAAACTTTACTTAAAAGAGCTATCAAGGTTTTCCAGTTTGCTGATAAATATAGGGGACCCTACAGCAATAGCTTGAAACCTATTGTATGCCCCTTCTATTGTTCTTACTCTGGTTATCAGGATGAATTGTTGTGGGGTGCTGCTTGGCTTAACAAGGCAACTAAGAACCCAATGTACTTAAACTACATTAAGGTCAATGGACAGATCCTTGGGGCTGATGTGTCTGATAATACCTTTGGATGGGATAACAAACATGTTGGAGCAAGGATACTACTTTCTAAGGAATTTCTTGTTCAAAAGGTGAAATCCCTTTATGACTACAAGGGTCATGCAGACAATTTTATCTGTTCTGTTATCCCTGGATCATCTTTATCTTCCTCTCAATATACTCCAGGAGGGCTTTTGTTCAAGATGAGTGATAGTAACATGCAATATGTCACTTCCACCTCCTTCCTACTCTTAACTTATGCAAAATACTTAACCACTGCCCGCACGGTTGTGAACTGTGGTGGAACCATCATAACTCCAAAGAGCCTACGAGCTATAGCCAAAAAACAGGTGGATTACTTGTTGGGAGACAACCCATTAAAGATGTCATATATGGTAGGGTATGGTGCAAGGTACCCACAAAGGATACATCACAGGGGTTCATCACTTCCATCTATTGCTGTTCACCCTAATAAGATACAATGTTCAGAAGGATTCAATGTAATGAACACACAATCCCCTAACCCCAACATTCTTGTAGGTGCTGTTGTGGGGGGACCTGATTTGCATGATAGTTTCCCAGATGAACGATCAGATTATGAGCAATCAGAGCCAGCTACTTACATCAACGCACCTCTTGTAGGATCACTGGCTTATCTTGCACACTCATTTGGACAACTCTAA 1215 0.4198 MAFTTTMLSWSVIEFGGVMKTELENAREAIRWGTNYHLKATAYPDTIYVQVGDADKDHACWERPEDMDTPRNVYKIDRNNPGSDVAAETAAALAAASIVFRKIDPIYSKTLLKRAIKVFQFADKYRGPYSNSLKPIVCPFYCSYSGYQDELLWGAAWLNKATKNPMYLNYIKVNGQILGADVSDNTFGWDNKHVGARILLSKEFLVQKVKSLYDYKGHADNFICSVIPGSSLSSSQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTTARTVVNCGGTIITPKSLRAIAKKQVDYLLGDNPLKMSYMVGYGARYPQRIHHRGSSLPSIAVHPNKIQCSEGFNVMNTQSPNPNILVGAVVGGPDLHDSFPDERSDYEQSEPATYINAPLVGSLAYLAHSFGQL* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0503 404 Pfam Glycosyl hydrolase family 9 1 393 IPR001701 GO:0004553|GO:0005975
Tpr6g0503 404 PANTHER ENDO-1,4-BETA-GLUCANASE 1 403 - -
Tpr6g0503 404 Gene3D - 1 400 IPR012341 GO:0005975
Tpr6g0503 404 PANTHER ENDOGLUCANASE 1 1 403 - -
Tpr6g0503 404 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 297 323 IPR018221 -
Tpr6g0503 404 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 370 388 IPR033126 -
Tpr6g0503 404 SUPERFAMILY Six-hairpin glycosidases 1 402 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0503 Tpr-Chr6 4142108 4144237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0503 1 404 Glycoside Hydrolase AT4G02290 80.198 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0503 K01179 - gmx:100793900 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0503 6 4142108 4144237 Tpr1g1318 1 11874126 11877320 PCT