Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1318 ATGACTCTTTCCCTTTCCCTCACTCTCCTCTTCCTTCTTTCCCTTTTCTCCTTTTCACTTCTCCACACTCATGCCATTCCACTCCATCGCCACCACCCTCACTTCGCCACACACAACTACAAAGATGCTCTCACCAAATCCATTCTCTTTTTTGAAGGCCAAAGATCAGGAAAACTCCCTTCAAATCAGAGAATCTCTTGGAGAAGAGACTCTGGTCTCTCTGATGGTTCAGCATTACATGTTGATTTGGTTGGAGGGTACTATGATGCTGGTGACAATGTCAAGTTTGGTTTTCCTATGGCTTTTACTACCACCATGCTTTCATGGAGTGTTATTGAGTTTGGTGGGATGATGAAAGGTGAGTTACCAAATGCTAGAGAAGCTATTCGTTGGGCTACTGATTATCTTCTTAAAGCCACTGCAAATCCAAACACCATTTATGTTCAGGTTGGAGATGCTAAAAAGGACCATGCTTGTTGGGAGAGACCAGAAGACATGGACACACCAAGAAGTGTTTTTAAGATTGATGCAAATGCACCTGGTTCTGAAGTTGCTGCAGAAACTGCTGCAGCATTAGCAGCTGCTTCTCTTGTTTTCAGAAGAAGTGATCCAACATACTCCAAGGTTTTAGTAAGAAGGGCTATTAGGGTCTTTCAGTTTGCGGATAAACACAGAGGATCTTACAGCAATGCCTTGAAACCCTTTGTGTGTCCCTTCTATTGCTCTTACTCTGGCTATCAGGATGAGTTGTTGTGGGGTGCTGCTTGGTTACATAAAGCTACAAAGAATCCAATGTACCTAAATTACATTCAAGTTAATGGTCAAATCCTAGGAGCTGCTGAGTATGACAACACTTTTGGTTGGGATAACAAACATGTTGGAGCAAGGATTCTTCTTTCAAAGGAATTTCTAGTTCAAAGGGTAAAATCCCTCCATGACTACAAGGGTCATTCAGACAATTTCATTTGTTCTTTAATTCCTGGAGCTGGATCCTCTTCTGCACAATATACCCCAGGTGGGCTTTTGTTCAAGATGAGTGATAGTAACATGCAGTATGTCACATCTACTAGCTTCTTGTTGGTAACATATGCCAAATACTTGACCAAATCACATACTGTTGTGCAATGTGGTGGTACCACTGTTACACCAAAGAAACTCAGAACCTTAGCCAAGAAACAGGTGGATTACTTGCTAGGAGATAACCCATTAAAGATGTCATACATGGTGGGGTATGGACAAAGGTATCCACAAAGGATACACCACAGAGGATCATCACTTCCTTCAATGGCTGTACACCCAGGAAAGATCCAATGTTCAGCAGGATTCAGTGTAATGAGTTCACAATCCCCTAATCCTAATATTCTAGTGGGTGCTGTTGTTGGTGGACCAGATCAACATGATAGGTTTCCAGATGAACGGTCAGATTATGAGCAATCAGAACCAGCTACTTATGTTAATGCACCACTTGTTGGAACATTGGCTTATCTTGCACACTCTTTTGGTCAAATTTAG 1512 0.42 MTLSLSLTLLFLLSLFSFSLLHTHAIPLHRHHPHFATHNYKDALTKSILFFEGQRSGKLPSNQRISWRRDSGLSDGSALHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGMMKGELPNAREAIRWATDYLLKATANPNTIYVQVGDAKKDHACWERPEDMDTPRSVFKIDANAPGSEVAAETAAALAAASLVFRRSDPTYSKVLVRRAIRVFQFADKHRGSYSNALKPFVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIQVNGQILGAAEYDNTFGWDNKHVGARILLSKEFLVQRVKSLHDYKGHSDNFICSLIPGAGSSSAQYTPGGLLFKMSDSNMQYVTSTSFLLVTYAKYLTKSHTVVQCGGTTVTPKKLRTLAKKQVDYLLGDNPLKMSYMVGYGQRYPQRIHHRGSSLPSMAVHPGKIQCSAGFSVMSSQSPNPNILVGAVVGGPDQHDRFPDERSDYEQSEPATYVNAPLVGTLAYLAHSFGQI* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1318 503 PANTHER ENDO-1,4-BETA-GLUCANASE 4 503 - -
Tpr1g1318 503 PANTHER ENDOGLUCANASE 17 4 503 - -
Tpr1g1318 503 Pfam Glycosyl hydrolase family 9 40 493 IPR001701 GO:0004553|GO:0005975
Tpr1g1318 503 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 469 487 IPR033126 -
Tpr1g1318 503 SUPERFAMILY Six-hairpin glycosidases 37 501 IPR008928 GO:0005975
Tpr1g1318 503 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 396 422 IPR018221 -
Tpr1g1318 503 Gene3D - 36 503 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1318 Tpr-Chr1 11874126 11877320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1318 3 499 Glycoside Hydrolase AT1G02800 74.354 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1318 K01179 - gmx:100789144 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1318 1 11874126 11877320 Tpr1g1318 1 11874126 11877320 ECH
Tpr6g0503 6 4142108 4144237 Tpr1g1318 1 11874126 11877320 PCT