Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0404 ATGAGGAAACCTTCAACAATTGTGGATGTGTTTCTGGTACTTGCATTGTTGTGTTGTAGCTCATGGAAAGTGTGGAGCATCACACTTTGCAAAGAGACAAACTTGGACAAAGTTAGACCTCATAGTGTCAGTATTACTGAATTTGGTGCTGTTGGCGACGGGATCACTCTCAACACAAAATCGTTTCAGAATGCGATTTTCTACCTAAATTCTTTTTCAGACAAAGGTGGAGCCAAGCTTTTTGTTCCAGCCGGTAGGTGGTTAACCGGTAGTTTTGATCTCATTAGCCACCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACGAACTTCGAGGATTGGCCGGTTGTTGATCCTCTACCGTCTTATGGACGAGGAAGGGAGTTGCCGGGTGGGAGACATAGGAGCCTCATCTATGGAAGCAATTTGACTGATGTTATCATAACAGGTAACGAGGGAATTATTGATGGTCAAGGGAGTATCTGGTGGAGCAAGTTTAGAAACAAAACTCTGGATTATACACGTCCGCATTTGGTAGAATTGATAAATTCAACCGGGATTCTCATTTCAAATTTAACATTCTTGGATTCTCCATTTTGGACAATTCATCCTGTATATTGCAGCCAAGTCACAATTCAGAATGTCACAATTCTTGCTCCTCTCGATTCACCAAATACAGACGGGATTGATCCAGACTCTTCTGATGATGTGTGCATTGAAGACTGTTATATAAGCACTGGTGATGATTTGATTGCCATCAAAAGCGGATGGGACGAGTATGGAATTGCATTTGGTCGTCCGAGCACAAATATCGTCATCCACAGGCTTGTTGGGAGAACTCGTACAAGCGCAGGGATAGCTATTGGAAGTGAGATGTCGGGCGGTGTATCAAATGTTCGTGCTAAAGATATACACTTTTATGATTCATATTCTGCAATCAGAATAAAGACTTCACCCGGAAGAGGCGGTTATGTTAGAAACGTCTATGTCTCTAACATGACATTGACTAATGTTGATATTGCTATTAGGTTCACCGGTTCATATGGTGAACATCCAGATGATGGTTATGACCCAAATGCTCAACCGGTGATTGAAAGAATTACTTTCGAGGACGTGACAGGAGAAAATATAACAAAAGCAGGTCTTATAGAGGGTATAGAAGGTGACAATTTTGTGGATATCTGCTTATCAAATATCACCCTTAATGTGAGCTCAAACTATCCATGGAACTGCTCTAATGTTAGAGGATACTCTGACAAGGTTTTGCCGGAAGCTTGTGAACCGCTAAAAGAGAGAATATTTCCTGACCATTGTTCGGACTGTTACCATTTGTCGAATCATCGACAAAGTTCAAATAATCAAAACATAGGACAAAAATTTCACTTGACATAA 1401 0.4097 MRKPSTIVDVFLVLALLCCSSWKVWSITLCKETNLDKVRPHSVSITEFGAVGDGITLNTKSFQNAIFYLNSFSDKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNFEDWPVVDPLPSYGRGRELPGGRHRSLIYGSNLTDVIITGNEGIIDGQGSIWWSKFRNKTLDYTRPHLVELINSTGILISNLTFLDSPFWTIHPVYCSQVTIQNVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIVIHRLVGRTRTSAGIAIGSEMSGGVSNVRAKDIHFYDSYSAIRIKTSPGRGGYVRNVYVSNMTLTNVDIAIRFTGSYGEHPDDGYDPNAQPVIERITFEDVTGENITKAGLIEGIEGDNFVDICLSNITLNVSSNYPWNCSNVRGYSDKVLPEACEPLKERIFPDHCSDCYHLSNHRQSSNNQNIGQKFHLT* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0404 466 Pfam Glycosyl hydrolases family 28 80 418 IPR000743 GO:0004650|GO:0005975
Tpr6g0404 466 SMART pbh1 299 320 IPR006626 -
Tpr6g0404 466 SMART pbh1 210 236 IPR006626 -
Tpr6g0404 466 SMART pbh1 328 349 IPR006626 -
Tpr6g0404 466 SMART pbh1 237 269 IPR006626 -
Tpr6g0404 466 SMART pbh1 271 293 IPR006626 -
Tpr6g0404 466 Gene3D - 23 424 IPR012334 -
Tpr6g0404 466 SUPERFAMILY Pectin lyase-like 34 432 IPR011050 -
Tpr6g0404 466 PANTHER OS07G0245200 PROTEIN 7 451 - -
Tpr6g0404 466 PANTHER PECTIN LYASE-RELATED 7 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0404 Tpr-Chr6 3314080 3317958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0404 1 450 Glycoside Hydrolase AT3G62110 68.421 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0404 - - gmx:100782602 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0404 6 3314080 3317958 Tpr1g2310 1 25963590 25966136 PCT