Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2310 ATGAAGAGAGTTTCAGCTGTGGATGTGTTTTTGGTACTTTCATTGATTGGTTGTAGCTTATGGACAGTTCGCAGCAGTTCAAGCTGCAAACAGATAAACACAATGGAAGTTCGCCCACACAGTGTTAGTATTATTGAATTTGGAGCAGTTGGTGATGGGATCACTCTTAATACAAAGGCGTTTCAGAATGCAATCTTTTACCTAAATTCATATGCTGACAAAGGTGGAGCCAAGCTTTTTGTTCCTGCTGGTCAGTGGTTAACTGGTAGTTTTGATCTCATCAGTCATTTGACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAATGAACTCTGAAGATTGGCCGGTTGTGGATCCTCTACCATCATATGGCAGGGGAAGGGAGTTGCCGGGTGGACGGCACAGAAGCCTCATTTATGGGAACAATTTAACTGATGTCATCATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGAATAAATTTCGTAACAAAACACTGGACCATACACGCCCTCATTTAGTCGAGATGATGAATTCAACAGAGGTTCTCATTTCAAATTTAACCTTCTTGAATTCACCATTTTGGACAATTCATCCTGTATATTGCAGCCATGTTAGAGTTCAGAATGTCACAATCCTTGCTCCTCCTAGCTCACCAAATACAGATGGGATTGATCCAGATTCTTCTGATGATGTGTGCATTGAAGACTGCTATATAAGCACCGGAGATGATTTGATTTCCATCAAAAGTGGATGGGATGAATATGGAATTTCATTTGGTCGACCGAGTACAAACATTATCATCCGCAGGCTCACTGGGAAGACAACGAGTTCTGGGATTGCTATCGGAAGTGAGATGTCCGGAGGTGTTTCAGAAGTTCATGCAGAAGATATTTACATATTTGATTCACATAGTGCAATTAGAATAAAGACTTCTCCCGGAAGGGGAGGTTATGTTAAAAATGTATATATCTCCAACATGACATTGGTTAATGTAAGTATTGCTATAAGGTTCAGTGGTTTGTATGGAGAGCATCCTGATGACACATATGATCCGGATGCTCTACCTGTGATAGAAAGGATTACTGTCAAGGATGTGATAGGGGAAAACATCAAACGCGCCGGCCTTATACAAGGTATTAATGGTGACAACTTTGTCAATATCTGTCTATCAAACATCACTGTTAATGTGAGCTCGAAAATTCCATGGAACTGCTCTTACATTAAAGGATATTCTGAGTTGGTTTCTCCGGAAGCTTGTGAGCAACTCAACGAGAGAATATCCCCTGATCATTTTTCAGACTGTTATAAGTTACCAGATCTCATAAAGAGTTCAAGTAGTCGAAACAGGGCTGCTTGGTTTCCGTCTTGGTAG 1395 0.4079 MKRVSAVDVFLVLSLIGCSLWTVRSSSSCKQINTMEVRPHSVSIIEFGAVGDGITLNTKAFQNAIFYLNSYADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSMNSEDWPVVDPLPSYGRGRELPGGRHRSLIYGNNLTDVIITGNNGTIDGQGSIWWNKFRNKTLDHTRPHLVEMMNSTEVLISNLTFLNSPFWTIHPVYCSHVRVQNVTILAPPSSPNTDGIDPDSSDDVCIEDCYISTGDDLISIKSGWDEYGISFGRPSTNIIIRRLTGKTTSSGIAIGSEMSGGVSEVHAEDIYIFDSHSAIRIKTSPGRGGYVKNVYISNMTLVNVSIAIRFSGLYGEHPDDTYDPDALPVIERITVKDVIGENIKRAGLIQGINGDNFVNICLSNITVNVSSKIPWNCSYIKGYSELVSPEACEQLNERISPDHFSDCYKLPDLIKSSSSRNRAAWFPSW* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2310 464 PANTHER OS07G0245200 PROTEIN 7 450 - -
Tpr1g2310 464 PANTHER PECTIN LYASE-RELATED 7 450 - -
Tpr1g2310 464 Pfam Glycosyl hydrolases family 28 137 416 IPR000743 GO:0004650|GO:0005975
Tpr1g2310 464 SMART pbh1 209 235 IPR006626 -
Tpr1g2310 464 SMART pbh1 326 347 IPR006626 -
Tpr1g2310 464 SMART pbh1 270 291 IPR006626 -
Tpr1g2310 464 SMART pbh1 297 318 IPR006626 -
Tpr1g2310 464 SMART pbh1 236 268 IPR006626 -
Tpr1g2310 464 Gene3D - 20 417 IPR012334 -
Tpr1g2310 464 SUPERFAMILY Pectin lyase-like 35 429 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2310 Tpr-Chr1 25963590 25966136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2310 1 464 Glycoside Hydrolase AT3G62110 66.454 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2310 - - mtr:MTR_1g086030 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2310 1 25963590 25966136 Tpr1g2310 1 25963590 25966136 ECH
Tpr6g0404 6 3314080 3317958 Tpr1g2310 1 25963590 25966136 PCT