Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0378 ATGATGAAGCTCATCGCAGTATTGTTGCTTGTGGTGTTTACCACCTTCACCACATCAGATCCTGATAATCTTCAAGACCTCTGTGTTGCAGACCTTGCTTCCGCGATTCTCGTGAATGGATTCACCTGCAAACCAGCTACAAACGTAACCGCGGCCGATTTCTCCTCCAACATACTAGCCAAACCAGGTGCAACAAACAACACATTTGGTTCCTTAGTAACAGCAGCCAATGTTCAAAAAATCCCGGGACTAAACACACTTGGTGTGTCATTAGCAAGAATTGATTACGCACCAGGGGGAATTAACCCACCTCACACTCATCCACGTGCAACAGAGATTGTTTTTGTTCTTGAAGGTCAATTAGATGTTGGATTCATAACAACAGCTAATGTTTTGATATCAAAAACTATTGTTAAGGGTGAAACATTTGTGTTTCCTAAAGGATTGGTTCATTTCCAAAAGAACAATAATGGTTATGAAGCTGCTTCAGTGATTTCAGCATTTAATAGTCAATTGCAAGGGACAGTGAATGTTCCTCTTACATTGTTTGCTGCTACACCACCTGTTGCAGATCATGTGTTGGCTCAAACATTCCAAATTGGCACTAAAGAAGTTCAGAAAATTAAGGCTAAGCTTGCACCCAAGAAATAG 651 0.4101 MMKLIAVLLLVVFTTFTTSDPDNLQDLCVADLASAILVNGFTCKPATNVTAADFSSNILAKPGATNNTFGSLVTAANVQKIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFITTANVLISKTIVKGETFVFPKGLVHFQKNNNGYEAASVISAFNSQLQGTVNVPLTLFAATPPVADHVLAQTFQIGTKEVQKIKAKLAPKK* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0378 216 SUPERFAMILY RmlC-like cupins 20 211 IPR011051 -
Tpr6g0378 216 CDD cupin_OxOx 20 212 - -
Tpr6g0378 216 Gene3D Jelly Rolls 19 214 IPR014710 -
Tpr6g0378 216 Pfam Cupin 59 206 IPR006045 -
Tpr6g0378 216 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 4 6 214 - -
Tpr6g0378 216 PRINTS Germin signature 105 125 IPR001929 GO:0030145
Tpr6g0378 216 PRINTS Germin signature 135 155 IPR001929 GO:0030145
Tpr6g0378 216 PRINTS Germin signature 169 184 IPR001929 GO:0030145
Tpr6g0378 216 SMART Cupin_1_3 56 206 IPR006045 -
Tpr6g0378 216 ProSitePatterns Germin family signature. 100 113 IPR019780 GO:0030145
Tpr6g0378 216 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 6 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0378 Tpr-Chr6 3079129 3080821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0378 5 216 Miscellaneous Gene Families AT3G05930 52.582 5.00e-73 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0378 - - gmx:100791628 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0378 6 3079129 3080821 Tpr6g0378 6 3079129 3080821 ECH
Tpr6g0378 6 3079129 3080821 Tpr1g2341 1 26248660 26250438 PCT