Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2341 ATGAAGCTTGAAAATTCCATCTTTCTTGTGACTTTGGCTATACTCTTAGCCACCAGTTTCTCATCAGATCCTGACTCTCTTCAAGACCTCTGTGTTGCTGACCTTTCCTCAGGCGTGACAGTGAACGGGTTCACTTGCAAAGCGGCATCCAAGGTAAATGCCACTGATTTCTCCTCCAACATACTAGCCAAACCAGGATCCACCAACAACACATTTGGCTCAGTGGTCACTGGAGCCAACGTTCAGAAAGTCCCAGGACTCAACACTCTCGGCGTGTCTCTGTCAAGGATTGACTATGCCCCAGGTGGCCTCAACCCACCTCACACTCACCCACGCGCCACAGAGGTGGTGTTTGTGCTTGAAGGACAACTAGATGTTGGGTTCATAACTACGGCCAATGTGCTCATATCAAAGACCATTAACAAGGGTGAGATATTTGTGTTCCCAAAAGGCTTAGTCCACTTTCAAAAGAACAATGCCAATGTACCTGCTGCTGTTCTTTCAGCCTTCAACAGCCAACTTCCTGGAACACAGTCCATTGCTACCACCTTGTTTGCGGCCACACCTTCTGTTCCGGACAATGTGTTGACCAAGACATTCCAAGTAGGTACCAAAGAGGTTGAGAAAATCAAGTCCAGGCTTGCACCCAAAAAGTAA 657 0.4764 MKLENSIFLVTLAILLATSFSSDPDSLQDLCVADLSSGVTVNGFTCKAASKVNATDFSSNILAKPGSTNNTFGSVVTGANVQKVPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGQLDVGFITTANVLISKTINKGEIFVFPKGLVHFQKNNANVPAAVLSAFNSQLPGTQSIATTLFAATPSVPDNVLTKTFQVGTKEVEKIKSRLAPKK* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2341 218 Pfam Cupin 62 207 IPR006045 -
Tpr1g2341 218 Gene3D Jelly Rolls 22 216 IPR014710 -
Tpr1g2341 218 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Tpr1g2341 218 PANTHER GERMIN-LIKE PROTEIN 12 216 - -
Tpr1g2341 218 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Tpr1g2341 218 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Tpr1g2341 218 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Tpr1g2341 218 SMART Cupin_1_3 59 208 IPR006045 -
Tpr1g2341 218 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
Tpr1g2341 218 CDD cupin_OxOx 23 214 - -
Tpr1g2341 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2341 Tpr-Chr1 26248660 26250438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2341 9 218 Miscellaneous Gene Families AT3G05930 55.924 6.10e-84 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2341 - - gmx:100791828 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2341 1 26248660 26250438 Tpr1g2341 1 26248660 26250438 ECH
Tpr6g0378 6 3079129 3080821 Tpr1g2341 1 26248660 26250438 PCT