Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0353 ATGGCACCAGACATCACCACCGCAGTCCTCAACACCACCGTGGAGAAACCCAAAGTTAACGGTGGTAAAGGCCGTGCTTTTGTGACTTTCCTAGCTGGAAACGCTGATTACATAAAAGGTGTTGTTGGTTTAGCCAAAGGGTTAAGAAAAACCAAAACTATGTACCCTTTGGTTGTTGCAATTTTACCTGATGTTCCTCAAGAACATCGTAAGATCCTAGTTTCACAAGGTTGCATTGTTAAGGAAATTGCCCCTGTTTATCCTCCACCTAACCAAACTCAATTTGCTATGGCTTATTATGTCATCAATTACTCCAAACTACGTATTTTTGAGTTTGAGGAGTATAGCAAGATGATTTACCTAGATGGTGATATTCAAGTTTTTGAAAACATTGACCATCTATTTGATCTACCTGATGACTACTTCTATGCTGTGATGGACTGTTTCTGTGAGAAAACTTGGAGTCACACCCCTCAGTATAAGATTGGATACTGCCAACAATGTCCTGATAAGGTTCAATGGCCTTCTGATTTTGGGCCCAAACCTCCTCTCTATTTCAATGCTGGAATGTTCGTTTTTCAGCCTAATGTTGCCACATATCATGATCTCCTTGAAAAAGTCAAAATTGTCAAACCAACTCCCTTTGCTGAACAGGACTTTTTGAACATGTATTTCAAGGATAAATACAAGCCTATACCTAATGTATACAATCTTGTCTTGGCTATGCTGTGGCGTCACCCTGAGAATGTTGAGCTAGAGAAAGTTCAAGTTGTTCACTATTGTGCTGCGGGGTCTAAACCATGGAGGTACACAGGGGAGGAAGAGAACATGGACAGAGAAGACATAAAAATGTTGGTGAAGAAATGGAAAGAGATATATGAAGATGAGACATTAGATTACAACAACAATGTTAGAGTTGAACGTTTCACAGCTGCACTATTAGAGGCTGGTGGGATTAAGTCAGTGATCTCCCCAAATGCTGCTTAA 987 0.4032 MAPDITTAVLNTTVEKPKVNGGKGRAFVTFLAGNADYIKGVVGLAKGLRKTKTMYPLVVAILPDVPQEHRKILVSQGCIVKEIAPVYPPPNQTQFAMAYYVINYSKLRIFEFEEYSKMIYLDGDIQVFENIDHLFDLPDDYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVQWPSDFGPKPPLYFNAGMFVFQPNVATYHDLLEKVKIVKPTPFAEQDFLNMYFKDKYKPIPNVYNLVLAMLWRHPENVELEKVQVVHYCAAGSKPWRYTGEEENMDREDIKMLVKKWKEIYEDETLDYNNNVRVERFTAALLEAGGIKSVISPNAA* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0353 328 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 24 303 IPR029044 -
Tpr6g0353 328 SUPERFAMILY Nucleotide-diphospho-sugar transferases 28 297 IPR029044 -
Tpr6g0353 328 CDD GT8_Glycogenin 25 295 - -
Tpr6g0353 328 Pfam Glycosyl transferase family 8 29 271 IPR002495 GO:0016757
Tpr6g0353 328 PANTHER GALACTINOL SYNTHASE 2 1 326 IPR030515 GO:0006012|GO:0047216
Tpr6g0353 328 PANTHER GLYCOGENIN SUBFAMILY MEMBER 1 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0353 Tpr-Chr6 2823111 2826555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0353 1 328 Glycosyltransferase AT1G56600 73.669 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0353 K18819 - gmx:100800249 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0353 6 2823111 2826555 Tpr6g0353 6 2823111 2826555 ECH
Tpr6g0353 6 2823111 2826555 Tpr1g1356 1 12401747 12403646 PCT