Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1356 ATGGCTCCTGATCTCATAACCGCTGCAACCAACATCACCAACGCTCAAGGTAAGGCCACAAAACGCGCTTTTGTGACCTTCCTTGCCGGAAACGGTGACTATGTCAAGGGTGTTGTCGGTTTAGCCAAAGGCCTCCGTAAGGTTAAAACCATGTACCCTCTTGTGGTTGCAGTTTTGCCTGATGTTCCGGTTGAACATCGGAATATTCTCACCTCTCAGGGTTGCATTGTTAGAGAGATTGAACCTGTTTATCCTCCTGAGAATCAAACTCAATTTGCTATGGCTTATTATGTCATCAACTACTCCAAATTGCGTATTTGGGCTTTTGAGGATTATGACAAGATGATTTACCTTGATGGTGACATTCATGTTTTTCAAAACATTGACCACTTATTTGACTTGCCAAATAACTATTTCTATGCTGTAAAGGATTGTTTTTGTGAGGCCTCTTGGCGTCACACTAAGCAATATGAAATCGGTTACTGTCAGCAGTGTCCTGATAAGGTTCAATGGCCAACAAATTTTGGACCCAAACCACCTCTCTACTTCAATGCTGGCATGTTTGTTTATGAACCTAATATGACTACTTATCATGATCTCCTGCAAAAACTTCAAGTCACTAAGCCAACTTCCTTTGCTGAGCAGGATTTTTTGAACATGTACTTCAATGACAAATATAAGCCAATTCCTAATGTTTATAATCTTGTGCTGGCCATGTTATGGCGTCACCCTGAGAATGTTGAGCTTGAAAAAGTTAAAGTTGTTCATTATTGTGCAGCTGGGTCTAAGCCTTGGAGGTATACAGGGGTGGAAGAGAATATGCAAAGAGAAGATATTAAGATGTTGGTGAAGAGATGGTGGGATGTGTATGAAGATGAAAGTTTAGATTACAAGGAACCGATTAATGCAAATAAGTTAACATCAGCAATTTTGGAAGCTAATGGTATCAAGTTTGTACCTGCTCCATCTGCTGCTTAA 978 0.4039 MAPDLITAATNITNAQGKATKRAFVTFLAGNGDYVKGVVGLAKGLRKVKTMYPLVVAVLPDVPVEHRNILTSQGCIVREIEPVYPPENQTQFAMAYYVINYSKLRIWAFEDYDKMIYLDGDIHVFQNIDHLFDLPNNYFYAVKDCFCEASWRHTKQYEIGYCQQCPDKVQWPTNFGPKPPLYFNAGMFVYEPNMTTYHDLLQKLQVTKPTSFAEQDFLNMYFNDKYKPIPNVYNLVLAMLWRHPENVELEKVKVVHYCAAGSKPWRYTGVEENMQREDIKMLVKRWWDVYEDESLDYKEPINANKLTSAILEANGIKFVPAPSAA* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1356 325 Pfam Glycosyl transferase family 8 26 268 IPR002495 GO:0016757
Tpr1g1356 325 PANTHER GALACTINOL SYNTHASE 2 1 323 IPR030515 GO:0006012|GO:0047216
Tpr1g1356 325 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 19 296 IPR029044 -
Tpr1g1356 325 PANTHER GLYCOGENIN SUBFAMILY MEMBER 1 323 - -
Tpr1g1356 325 SUPERFAMILY Nucleotide-diphospho-sugar transferases 25 299 IPR029044 -
Tpr1g1356 325 CDD GT8_Glycogenin 22 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1356 Tpr-Chr1 12401747 12403646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1356 1 325 Glycosyltransferase AT1G56600 70.149 2.44e-180 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1356 K18819 - gmx:548050 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0353 6 2823111 2826555 Tpr1g1356 1 12401747 12403646 PCT