Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0319 ATGACCTCCTTGAGCAGAGAATTGGTGTTTCTGATACTCCAATTTCTGGAGGAAGAGAAGTTCAAAGAGTCGGTGCACAAGCTTGAGAAAGAATCTGGGTTTTTCTTCAATATGAAATACTTTGAGGAAAAAGTACAGGCAGGTGAATGGGAAGAAGTCGAGAAGTATTTAGCTGGGTTTACCAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAACAGAAATATCTGGAAGCACTTGATAGGCAAGACAAGGCAAAGGCGGTTGAGATATTAGTGGGTGATTTGAAAGTATTCTCCACCTTCAATGAGGAACTATACAAAGAAATAACTCAGCTGTTAACTCTTACTAATTTCAGGGAGAACGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAGGGATTATGCTGTTAGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTATTCCGCGATAAGCTCATCTTCCCTACTCTCAAGTCGTCAAGATTGCGAACATTAATCAATCAAAGTTTGAACTGGCAACACCAGCTTTGCAAAAACCCAAGGCCAAACCCAGATATAAAAACTTTATTTATTGATCACTCGTGTTCACCTTCCAATGGTCCTCTAGCACCAACACCTGTCAATCTTCCAGTTGCTGCTGTTGCAAAACCTGCTGCCTATACTACTTCACTTGGAATGGGAGCTCATGGTCCCTTTCCACCTGCCGCAGCAACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGTTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCAACCATACCTGTCCCACAGAATCAAGTGTCTATCTTGAAGCGTCCAAGAACACCTTCAACAACTCCTGGCATGGTTGAGTATCAGAGTGCTGATCATGAACAGCTAATGAAAAGGCTCCGGCCTGCTCCTTCTGTGGAGGAGGTTTCTTATCCTTCAGCTCGACAAGCCTCTTGGTCGCTGGATGATCTTCCAAGAACAGTAGCTATGTCTTTGCATCAAGGATCCTCTGTGACAAGCATGGATTTTCATCCTTCTCACCAAACCTTACTACTTGTTGGTTCTAACAATGGTGAGATTTCACTTTGGGAACTTGGGTTGCGAGAAAGGTTGGTCTCAAAACCATTCAAGATATGGGACATATCAGCATGCTCATTACCATTTCAGGCAGCTATGGTCAAAGATACACCTATTTCTGTCCGCCGTGTCACATGGAGCCATGATGGAAGTTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACATATATGCCTACAATGGATCAAATGAGCTTGCCCAGCGTATGGAGATTGATGCCCACATTGGTGCTGTGAATGACTTGGCATTTGCTCATCCAAATAAACAACTCTGTATTGTGACTTGTGGTGACGATAAGTTGATAAAGGTGTGGGATTTAACGGGACGAAGACTATTTAACTTTGAAGGGCATGAGGCTCCAGTATATTCTATCTGTCCTCATCACAAGGAGAACATTCAGTTCATATTTTCAACTGCCATTGATGGTAAGATAAAAGCATGGTTATATGATAATATGGGTTCTAGGGTTGACTATGATGCCCCCGGTCACTGGTGTACTACAATGCTTTACAGTGCTGATGGAACTAGATTATTTTCTTGTGGGACGAGTAAAGATGGAGAGTCATTCCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGGTTCAGAAAGAAATCTGCTGGTGTAGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCTGGTGAAGACGGCCAAATAAAGTTTTGGGACATGGACAACATTAATCTTCTAACAACCATTGATGCAGAGGGTGGTCTACAGGGACTTCCACACTTGAGATTCAATAAGGATGGAAATCTTCTTGCTGTTAGTACTGCAGATAATGGATTCAAAATTCTCGCTAATGCTGGTGGTCTTAGATCCCTAAGAACATCTGAAACTCCAGCATTTGAAGCATTGAGGACTCCCATTGAATCTGCTGCAAACAAGGTATCTGGCTCTTCTGCTGTTAATGTTAGTCCTGTCAGCTGTAAAGTGGAAAGGAGTTCCCCTGCGAGGCCTTCTCAAATTCTTAATGGTGTTGATCCTACGGGTAGAAGTGTGGAGAAACCTAGGACAGTAGAAGATGTAATGGATAGAACTAAATCATGGCAGCTGTCTGAAATTGTGGATCCTGTCCACTGTCGGTTAGTTACCATGCCTGACAACACAGATACTTCCAGCAAGGTCGTTCGGCTTTTATATACAAATTCTGGGGCTGGTCTTTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGTCTCGTAATGATCAGAATCCTAGTGGGAAGGCGACCGCCAGTGTTGTTCCAACCCACTGGCAACCCAACAGTGGTCTTCTTATGACCAATGATGTCTCGGGTGTCAACCTTGAAGAAGCGGTTCCTTGTATTGCACTCTCGAAGAATGACTCGTATGTTATGTCTGCATGTGGTGGAAAGATTTCTTTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGCCACCACCTCCTGCCTCTACATATCTGGCTTTCCACCCTCAGGATAACAACATCATAGCCATTGGGATGGAGGATTCAACTATTCACATTTATAATGTTAGAGTAGATGAGGTGAAAACAAAATTGAAGGGTCACCAAAAGCGAATTTCTGGTTTAGCTTTTTCAACCAATCTTGGCATCCTGGTTTCATCTGGTGCTGATGCTCATCTTTGCGTGTGGAGTATTGATTCATGGGAGAAAAGAAAAGCAGTTCCTATACAACTACCTGCGGGGAAGGCTCCTGTTGGTGAAACACGAGTGCAGTTCCATTCAGACCAACTCCGGTTATTGGTTGCCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGAACGCATTAGACAGTGGGTTCCACAAGATGTTCTGCCTGCTCCCATATCATATGCAGCTTATTCTTGCAACAGTCAGTTAATTTATGCTACATTTTGCGATGGCAACACCGGGGTCTTTGATGCTGACAGCTTGAAACTTAGATGTCGCATTGCACCATCGACATACTTCACACCGGCGACTTTAAACGGAAGCCAAGCTGTGTATCCTTTTGTTGTGGCAGCTCACCCACTAGAGCCCAACCAGTTTGCCCTTGGTTTGACTGATGGGTCAGTGAAAGTGATAGAGCCCAATGAATCAGAGGGAAAGTGGGGAACTAGTCCACCTATGGATAATGGATTGATGAATGGTAGGACAGCATCATCTACAACAAGCAACCATACACCTGATCAGGGCACACAAAGATAA 3399 0.4337 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARGIMLLELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHSCSPSNGPLAPTPVNLPVAAVAKPAAYTTSLGMGAHGPFPPAAATANANALAGWMANASVSSSVQAAVVTASTIPVPQNQVSILKRPRTPSTTPGMVEYQSADHEQLMKRLRPAPSVEEVSYPSARQASWSLDDLPRTVAMSLHQGSSVTSMDFHPSHQTLLLVGSNNGEISLWELGLRERLVSKPFKIWDISACSLPFQAAMVKDTPISVRRVTWSHDGSFVGVAFTKHLIHIYAYNGSNELAQRMEIDAHIGAVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQIKFWDMDNINLLTTIDAEGGLQGLPHLRFNKDGNLLAVSTADNGFKILANAGGLRSLRTSETPAFEALRTPIESAANKVSGSSAVNVSPVSCKVERSSPARPSQILNGVDPTGRSVEKPRTVEDVMDRTKSWQLSEIVDPVHCRLVTMPDNTDTSSKVVRLLYTNSGAGLLALGSNGVQKLWKWSRNDQNPSGKATASVVPTHWQPNSGLLMTNDVSGVNLEEAVPCIALSKNDSYVMSACGGKISLFNMMTFKVMTTFMPPPPASTYLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKTKLKGHQKRISGLAFSTNLGILVSSGADAHLCVWSIDSWEKRKAVPIQLPAGKAPVGETRVQFHSDQLRLLVAHETQLAIYDASKMERIRQWVPQDVLPAPISYAAYSCNSQLIYATFCDGNTGVFDADSLKLRCRIAPSTYFTPATLNGSQAVYPFVVAAHPLEPNQFALGLTDGSVKVIEPNESEGKWGTSPPMDNGLMNGRTASSTTSNHTPDQGTQR* 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0319 1132 MobiDBLite consensus disorder prediction 1109 1132 - -
Tpr6g0319 1132 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1128 IPR027728 GO:0006355
Tpr6g0319 1132 SUPERFAMILY WD40 repeat-like 833 1095 IPR036322 GO:0005515
Tpr6g0319 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 386 IPR001680 GO:0005515
Tpr6g0319 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 595 626 IPR001680 GO:0005515
Tpr6g0319 1132 SMART WD40_4 338 377 IPR001680 GO:0005515
Tpr6g0319 1132 SMART WD40_4 531 574 IPR001680 GO:0005515
Tpr6g0319 1132 SMART WD40_4 825 861 IPR001680 GO:0005515
Tpr6g0319 1132 SMART WD40_4 487 528 IPR001680 GO:0005515
Tpr6g0319 1132 SMART WD40_4 620 661 IPR001680 GO:0005515
Tpr6g0319 1132 SMART WD40_4 444 485 IPR001680 GO:0005515
Tpr6g0319 1132 SMART WD40_4 1052 1093 IPR001680 GO:0005515
Tpr6g0319 1132 SMART WD40_4 399 438 IPR001680 GO:0005515
Tpr6g0319 1132 SMART WD40_4 864 904 IPR001680 GO:0005515
Tpr6g0319 1132 SMART WD40_4 577 617 IPR001680 GO:0005515
Tpr6g0319 1132 SMART WD40_4 1002 1038 IPR001680 GO:0005515
Tpr6g0319 1132 SMART WD40_4 907 946 IPR001680 GO:0005515
Tpr6g0319 1132 MobiDBLite consensus disorder prediction 708 722 - -
Tpr6g0319 1132 ProSitePatterns Trp-Asp (WD) repeats signature. 472 486 IPR019775 -
Tpr6g0319 1132 SUPERFAMILY WD40 repeat-like 324 659 IPR036322 GO:0005515
Tpr6g0319 1132 MobiDBLite consensus disorder prediction 1095 1132 - -
Tpr6g0319 1132 Gene3D - 565 673 IPR015943 GO:0005515
Tpr6g0319 1132 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Tpr6g0319 1132 Pfam WD domain, G-beta repeat 912 946 IPR001680 GO:0005515
Tpr6g0319 1132 Pfam WD domain, G-beta repeat 346 376 IPR001680 GO:0005515
Tpr6g0319 1132 Pfam WD domain, G-beta repeat 451 485 IPR001680 GO:0005515
Tpr6g0319 1132 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Tpr6g0319 1132 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 914 949 - -
Tpr6g0319 1132 SMART ctlh 34 92 IPR006595 -
Tpr6g0319 1132 MobiDBLite consensus disorder prediction 708 728 - -
Tpr6g0319 1132 PANTHER PROTEIN, PUTATIVE-RELATED 1 1128 - -
Tpr6g0319 1132 Gene3D - 318 564 IPR015943 GO:0005515
Tpr6g0319 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 914 955 IPR001680 GO:0005515
Tpr6g0319 1132 Gene3D - 831 1102 IPR015943 GO:0005515
Tpr6g0319 1132 ProSiteProfiles Trp-Asp (WD) repeats profile. 451 486 IPR001680 GO:0005515
Tpr6g0319 1132 SMART Lish 4 36 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0319 Tpr-Chr6 2590736 2599953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0319 450 659 Miscellaneous Gene Families AT5G08390 25.701 1.94e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0319 - - gmx:100808421 2025.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0319 6 2590736 2599953 Tpr6g0319 6 2590736 2599953 ECH
Tpr6g0319 6 2590736 2599953 Tpr1g1402 1 12813189 12823641 PCT