Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1402 ATGACTTCTTTGAGTAGAGAATTGGTGTTTCTCATACTTCAGTTTCTTGATGAAGAGAAGTTCAAGGAATCTGTGCACAAGCTCGAGAAAGAATCAGGGTTCTATTTCAACATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGCGAATGGGAAGAAGTTGAAAAGTATTTATCAGGGTTTACCAAAGTTGACGATAATAGATACTCAATGAAAATATTCTTTGAAATTAGGAAGCAGAAATATCTGGAAGCCCTTGATCGGCAAGATAAGCCAAAGGCTGTAGAGATATTAGTGGGTGATTTAAAAGTGTTCTCCACCTTCAATGAAGAACTGTACAAAGAAATAACCCAGCTGTTAATTCTTAATAATTTCAGGGAGAACGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAAGTATTATGTTGATAGAACTAAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTTGCCTTCCCAACCCTTAAGTCATCAAGACTGAGAACTTTAATCAATCAGAGTCTGAACTGGCAGCACCAACTTTGTAAAAACCCAAGGCCAAACCCAGATATAAAGACTTTATTTACTGATCATACTTGTTCACCTTCTAATGGTCCACTGGCACCTACACCTGCCAATCTTCCAATTTCTGCAGTTGCAAAGCCCGTTGCTTATACTTCACTTGGAGTTCATGGTCCCTTCCCTCCTGCTGTTGCAACTGCAAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCATCAGCCTCATCATCTGTTCAAGCAGCCGTTGTCACAACGTCAACCATACCAGTCCCTCAGAATCAAGTATCTATCTTGAAACGTCCTAGAACACCTCCGGCAACTCCTGGGATTGTTGACTATCAGAATGCTGATCACGAACAGTTAATGAAAAGGATTCGTCCAGGTCATTCTGTGGAGGAGGTTTCCTATCCTGTGGCTCGACAAGCCTCTTGGTCACTGGATGATCTCCCAAGAACAGTGGCTATGACTTTGCATCAAGGATCCTCTGTGACAAGCATGGATTTTCATCCTTCTCACCACACCTTACTTCTTGTTGGTTCTAATAATGGTGAAATAACCCTCTGGGAACTCAGTTTACGAGAAAGGTTGGTCTCAAAGCCGTTCAAGATATGGGATGTGTCGGCTTGCTCATTACCATTTCAGGCTGCTGCAGTCAAGGATGCACCTATTTCTGTCAGTCGTGTCGCATGGAGCCCTGATGGAAATTTTGTGGGTGTTGCGTTTACTAAGCATCTGATTCATTTATATGCCTACACTGGGTCAAATGAGCTAGCCCAACGAATAGAGGTTGATGCCCATGTTGGTGGTGTGAATGATTTGTCATTTGCTCTACCAAATAAACAGTTGTGCATTGTAACTTGTGGAGATGATAAATTGATAAAGGTATGGGATGCAAATGGTCGACGGCTATTTACCTTTGAGGGGCATGAGGCACCTGTATATTCAATCTGTCCTCATCACAAAGAAAACATTCAGTTCATATTTTCAACAGCCATTGATGGGAAAATAAAGGCCTGGTTATATGATAACATGGGTTCTAGGGTTGACTATGATGCTCCTGGTCATTGGTGTACCACAATGCTTTACAGTGCTGATGGAAGTAGATTGTTTTCTTGTGGGACAAGTAAAGAGGGAGAGTCTTTTCTTGTTGAATGGAACGAAAGTGAAGGAGCCATTAAGAGAACGTACAATGGATTCAGAAAGAAGTCTGCTGGAGTCGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGTTGCAGGTGAAGATGGCCAAGTGAAGTTTTGGGACATGGACAACATTAATCTTTTAACAAGCACTGATGCAGATGGTGGGTTACAGGGCCTTCCACGCTTGAAATTCAATAAGGAAGGAAATATTCTTGCTGTTACTACTGTGGACAATGGATTCAAGATACTGGCTAATGCTACTGGTCTTAGATCCTTAAGAACAATTGAAACTCCAGCATTTGAAGCATTGAGGTCACCCATTGAATCCGCTGCAATCAAGGTATCAGGCTCTTCTACTGTTAATGTCAATCCTGTCAACTGTAAAGTGGAAAGAAGCTCCCCTGTTAGGCCTCCTCCAACAATTCTTAATGGAGTTGATCCCATGAGTCGAAGTGTAGAGAAATCAAGAACCGTGGAAGATGCAACAGATAGAGCTAAACCATGGCAATTATCTGAAATTTTGGATCCTGTCCAATGTCGGTCAGTTACCATGCCCGACAACACAGACTCATTCAGCAAGGTTGTACGACTTTTATATACAAATTCTGCTGTTGGTATTTTGGCCCTTGGTTCAAATGGTGTCCAGAAGCTTTGGAAATGGTCTCGCAATGAACAGAATCCAACTGGGAAGGCAACTGCCAGTGTTGTTCCACAACGTTGGCAACCAAACAGTGGTCTTCTGATGACTAATGATATTGCGGGTGTCAACCTTGAGGAAGCAGTCCCTTGCATTGCACTCTCAAAAAATGACTCATATGTTATGTCTGCTTGTGGTGGAAAAGTTTCATTATTTAACATGATGACATTCAAGGTGATGACAACATTCATGCCACCGCCTCCTGCATCTACCTTTCTAGCTTTCCATCCCCAGGATAATAACATTATATCCATTGGGATGGAGGATTCAACCATTCACATATATAATGTTAGAGTGGATGAGGTGAAATCAAAATTGAAGGGTCACCAGAGACGAATTACCGGTTTAGCCTTTTCAACCAATCTTAACATCCTGGTTTCATCCGGTGCTGATGCTCAACTGTGTGTGTGGAGCATTGATACGTGGGAGAAAAGAAAAGCAATTCCAATCCAACTACCTGCGGGAAAGTCCCCTGTTGGTGATACACGTGTTCAGTTCCATTCTGATCAACTTCGCTTATTGGTAGTTCACGAGACTCAATTGGCAATATACGAAGCCTCCAAGATGGAACGCATTCGGCAGTGGATTCCCCAAGATGTTCTGGCTGCTCCCATATCATATGCGGCATATTCCTGCAACAGTCAGTTAATATATGCTTCATTTTGTGATGCAAACATTGGGGTTTTTGATGCTGATAGCTTGAGACTAAGATGTCGTATTGCACCATCAATATGCTTGTCATCAGCCGCTTTAAATAGAAGCCAAGCTGTGTATCCTCTTGTGATTGCTGCTCATCCACTCGAACCTAACCAGTTTGCTGTTGGGTTGAGTGATGGGTCCGTCAAAGTGATAGAACCCAGTGAATCAGAGGGTAAGTGGGGATCTTCTCCGCCGACGGACAACGGAATCTTGAATGGTAAGGCACCATCCTCATCTACAACTAGCAACCATACGGCCGATCAGGCCCAACGATAA 3393 0.4285 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFYFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLILNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCSPSNGPLAPTPANLPISAVAKPVAYTSLGVHGPFPPAVATANANALAGWMANASASSSVQAAVVTTSTIPVPQNQVSILKRPRTPPATPGIVDYQNADHEQLMKRIRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHHTLLLVGSNNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVAWSPDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLCIVTCGDDKLIKVWDANGRRLFTFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKEGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLVAGEDGQVKFWDMDNINLLTSTDADGGLQGLPRLKFNKEGNILAVTTVDNGFKILANATGLRSLRTIETPAFEALRSPIESAAIKVSGSSTVNVNPVNCKVERSSPVRPPPTILNGVDPMSRSVEKSRTVEDATDRAKPWQLSEILDPVQCRSVTMPDNTDSFSKVVRLLYTNSAVGILALGSNGVQKLWKWSRNEQNPTGKATASVVPQRWQPNSGLLMTNDIAGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIISIGMEDSTIHIYNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKAIPIQLPAGKSPVGDTRVQFHSDQLRLLVVHETQLAIYEASKMERIRQWIPQDVLAAPISYAAYSCNSQLIYASFCDANIGVFDADSLRLRCRIAPSICLSSAALNRSQAVYPLVIAAHPLEPNQFAVGLSDGSVKVIEPSESEGKWGSSPPTDNGILNGKAPSSSTTSNHTADQAQR* 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1402 1130 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1130 IPR027728 GO:0006355
Tpr1g1402 1130 Gene3D - 562 686 IPR015943 GO:0005515
Tpr1g1402 1130 Gene3D - 319 561 IPR015943 GO:0005515
Tpr1g1402 1130 SUPERFAMILY C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 886 1095 IPR011048 -
Tpr1g1402 1130 SMART ctlh 34 92 IPR006595 -
Tpr1g1402 1130 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Tpr1g1402 1130 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 912 947 - -
Tpr1g1402 1130 MobiDBLite consensus disorder prediction 1091 1130 - -
Tpr1g1402 1130 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 330 437 IPR011044 -
Tpr1g1402 1130 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 413 949 IPR011047 -
Tpr1g1402 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 912 953 IPR001680 GO:0005515
Tpr1g1402 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Tpr1g1402 1130 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Tpr1g1402 1130 SMART WD40_4 823 859 IPR001680 GO:0005515
Tpr1g1402 1130 SMART WD40_4 484 525 IPR001680 GO:0005515
Tpr1g1402 1130 SMART WD40_4 439 482 IPR001680 GO:0005515
Tpr1g1402 1130 SMART WD40_4 862 902 IPR001680 GO:0005515
Tpr1g1402 1130 SMART WD40_4 335 374 IPR001680 GO:0005515
Tpr1g1402 1130 SMART WD40_4 905 944 IPR001680 GO:0005515
Tpr1g1402 1130 SMART WD40_4 574 614 IPR001680 GO:0005515
Tpr1g1402 1130 SMART WD40_4 397 435 IPR001680 GO:0005515
Tpr1g1402 1130 SMART WD40_4 1057 1091 IPR001680 GO:0005515
Tpr1g1402 1130 SMART WD40_4 1000 1036 IPR001680 GO:0005515
Tpr1g1402 1130 SMART WD40_4 528 571 IPR001680 GO:0005515
Tpr1g1402 1130 SMART Lish 4 36 IPR006594 GO:0005515
Tpr1g1402 1130 MobiDBLite consensus disorder prediction 1098 1130 - -
Tpr1g1402 1130 Pfam WD domain, G-beta repeat 911 944 IPR001680 GO:0005515
Tpr1g1402 1130 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Tpr1g1402 1130 Gene3D - 829 1109 IPR015943 GO:0005515
Tpr1g1402 1130 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Tpr1g1402 1130 PANTHER PROTEIN, PUTATIVE-RELATED 1 1130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1402 Tpr-Chr1 12813189 12823641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1402 429 642 Miscellaneous Gene Families AT5G08390 22.374 3.56e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1402 - - gmx:100793575 2095.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1402 1 12813189 12823641 Tpr1g1402 1 12813189 12823641 ECH
Tpr6g0319 6 2590736 2599953 Tpr1g1402 1 12813189 12823641 PCT