Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0063 ATGGAACAACAAGTGAAGAAGAAGAACAACAACAAAACCTTTGTCTTCCTATTTTTAGCCATTTTCTTCACTCTCTCATCAACAGCTGATCCATCTCACTTTCAAACTCTACCTATTCACTCTCTCCCCAACCCTTCAACCCTCTCATGGCCCGAATCAGAACAACCTTTATCCATATCCGAATCCGACGACAACCACCCAGATTCTCTCTCCCTTCAACTACACCATGCAGATTCACTCTCCTCCAACAAATCACCACAACACCTCTTCAATCTCAGACTCCAAAGAGATGCAGCTAGAGTCCAATCCTTCACCACTCTCGCAGCAGCATCTCTCAACCAAACCCGTCCACATAGATCCGCAACGGGTTTCAGCAGCTCTATCGTTTCAGGTCTTTCACAAGGTAGCGGTGAGTATTTCACACGCATAGGTGTTGGAACTCCGGCGAAGTACGTTTTCATGGTTCTTGACACCGGAAGCGACGTCGTTTGGCTTCAATGTGCTCCATGCCGGAAATGCTACTCACAAGCAGATCCAGTTTTTGACCCGACAAAATCACGCACCTACGCCGGTATCCCATGCGGTGCTCCTCTTTGCCGGAGACTTGACTCCGCCGGATGCAACAACAGGAACAAGATTTGTCAGTATCAAGTTTCTTACGGTGACGGGTCATTCACGTTCGGAGATTTCTCCACTGAAACGCTGACGTTTCGTAAAACGCGTGTTGCGCGCGTGGCTTTAGGATGTGGTCATGATAACGAAGGTCTTTTCGTTGGTGCTGCTGGTTTATTGGGTCTTGGTCGTGGAAAATTATCTTTTCCGGTCCAAACCGGTCGCCGGTTTAATCAGAAATTTTCTTATTGTCTTGTAGACCGGTCTGCTTCCGCAAAACCTTCTTCAGTTGTTTTTGGCGACTCAGCCGTTTCACGAACCGCCCGGTTCACTCCATTACTCAAAAACCCTAAACTAGATACTTTCTATTACGTTGAACTTCTTGGAATCAGTGTCGGCGGTGCGCCTGTTCACGGCGTCTCCGCTTCTCTCTTCAAGCTCGATACCGCCGGAAACGGCGGTGTTATAATTGATTCGGGTACTTCGGTGACTCGTTTGACCCGACCCGCTTACATTGCACTGAGAGATGCTTTTAGGCTTGGTGCTTCGCATCTGAAGAAGGCACCGGAGTTTTCATTGTTCGATACTTGCTTTGATTTGTCTGGACTCACTGAGGTGAAGGTGCCAACGGTGGTTCTTCATTTTCGAGGTGCTGACGTGTCACTTCCGGCGACGAATTACTTGATTCCGGTGGATAACAGTGGAAGCTTCTGTTTTGCTTTCGCCGGAACAATGAGTGGTTTGTCTATTATTGGTAACATTCAGCAACAAGGGTTTCGGGTCGTTTATGATCTTGCCACTTCTCGGGTCGGGTTTGCCCCGAGAGGGTGTGTATGA 1449 0.4817 MEQQVKKKNNNKTFVFLFLAIFFTLSSTADPSHFQTLPIHSLPNPSTLSWPESEQPLSISESDDNHPDSLSLQLHHADSLSSNKSPQHLFNLRLQRDAARVQSFTTLAAASLNQTRPHRSATGFSSSIVSGLSQGSGEYFTRIGVGTPAKYVFMVLDTGSDVVWLQCAPCRKCYSQADPVFDPTKSRTYAGIPCGAPLCRRLDSAGCNNRNKICQYQVSYGDGSFTFGDFSTETLTFRKTRVARVALGCGHDNEGLFVGAAGLLGLGRGKLSFPVQTGRRFNQKFSYCLVDRSASAKPSSVVFGDSAVSRTARFTPLLKNPKLDTFYYVELLGISVGGAPVHGVSASLFKLDTAGNGGVIIDSGTSVTRLTRPAYIALRDAFRLGASHLKKAPEFSLFDTCFDLSGLTEVKVPTVVLHFRGADVSLPATNYLIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVVYDLATSRVGFAPRGCV* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0063 482 Gene3D Acid Proteases 303 482 IPR021109 -
Tpr6g0063 482 MobiDBLite consensus disorder prediction 47 70 - -
Tpr6g0063 482 SUPERFAMILY Acid proteases 132 481 IPR021109 -
Tpr6g0063 482 Gene3D Acid Proteases 115 302 IPR021109 -
Tpr6g0063 482 PANTHER ASPARTYL PROTEASES 17 481 IPR001461 GO:0004190|GO:0006508
Tpr6g0063 482 Pfam Xylanase inhibitor N-terminal 139 305 IPR032861 -
Tpr6g0063 482 ProSiteProfiles Peptidase family A1 domain profile. 139 477 IPR033121 -
Tpr6g0063 482 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 154 165 IPR001969 GO:0004190|GO:0006508
Tpr6g0063 482 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 17 481 - -
Tpr6g0063 482 Pfam Xylanase inhibitor C-terminal 327 477 IPR032799 -
Tpr6g0063 482 PRINTS Pepsin (A1) aspartic protease family signature 145 165 IPR001461 GO:0004190|GO:0006508
Tpr6g0063 482 PRINTS Pepsin (A1) aspartic protease family signature 359 370 IPR001461 GO:0004190|GO:0006508
Tpr6g0063 482 PRINTS Pepsin (A1) aspartic protease family signature 453 468 IPR001461 GO:0004190|GO:0006508
Tpr6g0063 482 CDD cnd41_like 138 481 IPR033873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0063 Tpr-Chr6 556986 559046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0063 129 481 Miscellaneous Gene Families AT1G77480 28.756 1.19e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0063 K22683 - gmx:100794269 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0063 6 556986 559046 Tpr6g0063 6 556986 559046 ECH
Tpr6g0063 6 556986 559046 Tpr5g1461 5 27857531 27859229 PCT