Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1461 ATGGAAAACAAAGCACAAAACATTTTTCTCTTTTCCTTATTCTTCACATTCATATCTATCCGCTTCATTACCTCGTACCCACTTGAATTCCAAACCCACTCACCACTTCTCCACTCTCTCCCCCACCCACCAACACTCTCATGGCCCGAATCCAAATCCACTGAACCCGACCCGGAAAATTCCTCCACCCTCTACCTCCATCACATAGATGCTCTCTCTTTCAACAAAACCCCACAACAACTCTTCAACCTTAGACTCCAAAGAGACACTGCAAGAGTCAAAACCTTCACCTCATTAGCCTCATCTTTAAACCAAACCCGACCCGGTAAATCCGGATCCGGGTCGAGTGTAAGTAGCTCTGTAGTTTCAGGTTTAGCTTTAGGGAGTGGTGAGTATTTTACACGCATAGGAGTTGGAACACCACCAAGATATGTTTACATGATTCTTGATACTGGAAGTGATATTGTTTGGCTTCAATGTGCACCTTGTGAGAATTGTTACTCACAAACCGACCCGGTTTTTGACCCGAAGAAATCAAGTTCTTATGCTGGAATTTCGTGTTTGTCTCCTCTGTGCCGCCGGTTGGACTCACCGGGATGTAAGGGGAAAAGAGTTTGTCAGTATGAAGTCTCCTACGGTGATGGATCATTCACCGTGGGAGACTTCTCAACTGAAATGTTGACGTTTGGGAGAACCGGAGTTCCACGTGTGGCTATTGGTTGTGGTCATGATAATGAGGGACTCTTTAATGGCTCGGCCGGTTTATTTGGTTTAGGTCGTGGTGGTTTATCTTTTACTATCCAAACTGCATACCGGTTCAAACAAAAATTCTCTTATTGTTTTGTGGACCGGTTTGTTTCGAATAAACCATCTTCTATTGTTTTTGGTGACTCAGCCATTCCGCGAACCGTGTTGTTCACTCCTTTGATTAAAAATCTTAAATTACCCACTTTTTACTACGTTGAACTTCTAGGAATCAGTGTAGGTGGGCTGCCTGTTCGTGGCATTTCAGCTTCACTGTTTCGGTTCGACAAAACAGGAGATGGGGGTGTAATTATTGACTCTGGAACTTCAGTGACGCGACTCACTCGTCTTGCTTATGTGCCACTTAGAAATGCTTTTCGAATTGGGACCAGACATTTGAAACAAGGACCCGTGGACGAGCTTTTTGACACGTGTTATGATTTAGCAGGGATTAAGGAGTTGAAGATTCCGACTGTGGTGCTTCATTTTCGAGGTGCTGATATGAATTTGCCATCGGGGAATTTACTAGTTCCGGTGAACACAGACAAAAGAACTTATTGTTTTGCTTTTGCCGGAACGATGAGTAAGTTGTCTATTATAGGGAATATACAACAACAAGGGTTTCGGGTTACCTATGATTTGGCGGGTTCTCGGGTCGGATTTTCGCCGCAAGGGTGTGTGTGA 1428 0.4419 MENKAQNIFLFSLFFTFISIRFITSYPLEFQTHSPLLHSLPHPPTLSWPESKSTEPDPENSSTLYLHHIDALSFNKTPQQLFNLRLQRDTARVKTFTSLASSLNQTRPGKSGSGSSVSSSVVSGLALGSGEYFTRIGVGTPPRYVYMILDTGSDIVWLQCAPCENCYSQTDPVFDPKKSSSYAGISCLSPLCRRLDSPGCKGKRVCQYEVSYGDGSFTVGDFSTEMLTFGRTGVPRVAIGCGHDNEGLFNGSAGLFGLGRGGLSFTIQTAYRFKQKFSYCFVDRFVSNKPSSIVFGDSAIPRTVLFTPLIKNLKLPTFYYVELLGISVGGLPVRGISASLFRFDKTGDGGVIIDSGTSVTRLTRLAYVPLRNAFRIGTRHLKQGPVDELFDTCYDLAGIKELKIPTVVLHFRGADMNLPSGNLLVPVNTDKRTYCFAFAGTMSKLSIIGNIQQQGFRVTYDLAGSRVGFSPQGCV* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1461 475 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 147 158 IPR001969 GO:0004190|GO:0006508
Tpr5g1461 475 ProSiteProfiles Peptidase family A1 domain profile. 132 470 IPR033121 -
Tpr5g1461 475 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 20 474 - -
Tpr5g1461 475 Gene3D Acid Proteases 296 475 IPR021109 -
Tpr5g1461 475 Pfam Xylanase inhibitor C-terminal 319 470 IPR032799 -
Tpr5g1461 475 Gene3D Acid Proteases 110 295 IPR021109 -
Tpr5g1461 475 PANTHER ASPARTYL PROTEASES 20 474 IPR001461 GO:0004190|GO:0006508
Tpr5g1461 475 SUPERFAMILY Acid proteases 124 474 IPR021109 -
Tpr5g1461 475 PRINTS Pepsin (A1) aspartic protease family signature 138 158 IPR001461 GO:0004190|GO:0006508
Tpr5g1461 475 PRINTS Pepsin (A1) aspartic protease family signature 351 362 IPR001461 GO:0004190|GO:0006508
Tpr5g1461 475 PRINTS Pepsin (A1) aspartic protease family signature 446 461 IPR001461 GO:0004190|GO:0006508
Tpr5g1461 475 Pfam Xylanase inhibitor N-terminal 132 297 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1461 Tpr-Chr5 27857531 27859229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g1461 122 474 Miscellaneous Gene Families AT1G77480 27.390 1.53e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1461 K22683 - gmx:100791511 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0063 6 556986 559046 Tpr5g1461 5 27857531 27859229 PCT