Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0043 ATGAATCAGGAAATGAATGGAGTGGAACCTGAAAGGATCCAAGAGAAAATAGATTATGTATTTAAGGTTGTTGTGATTGGTGACTCAGCAGTAGGAAAGACTCAAATATTGTCAAGGTTTGCAAAGAATGAGTTCTGTTTTGACTCAAAATCAACCATTGGAGTTGAATTTCAAACAAGAACTGTCACAATTAATGGTAAACTCATCAAAGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGAGCGGTTACAAGTGCATACTACCGAGGAGCATTAGGAGCCATGCTGGTTTACGACATAACCAAAAGACAAACGTTCGATCATGTTGCTAGATGGGTCGAGGAACTACGATCACACGCAGACAGCTCCATTGTGATCATGCTAATTGGTAACAAAGGTGATCTTGTGGAACAAAGAGTGGTACAGACTGAAGATGCTGTGGAGTTTGCAGATGATCAGGGCCTATTTTTCTCAGAGACATCAGCACTGAGTGGTGAAAATGTGAACTCTGCTTTTTTGAAATTGCTTGAAGAGATTAATAAGGTTGTCTCAAAAAGGTCATTGGAGTGTAATAATAATATTGGAAATAATGTTGGTACACTTAAAGGATCGAAAATTGATATAATCTCAGGTGCTGAATTAGAAATTAGTGAAATGAAGAAAGTAGTACCTTCATGTTCATGTTGA 693 0.3838 MNQEMNGVEPERIQEKIDYVFKVVVIGDSAVGKTQILSRFAKNEFCFDSKSTIGVEFQTRTVTINGKLIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQTFDHVARWVEELRSHADSSIVIMLIGNKGDLVEQRVVQTEDAVEFADDQGLFFSETSALSGENVNSAFLKLLEEINKVVSKRSLECNNNIGNNVGTLKGSKIDIISGAELEISEMKKVVPSCSC* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0043 230 PANTHER RAS-RELATED PROTEIN RABA3 1 230 - -
Tpr6g0043 230 SMART rab_sub_5 21 184 - -
Tpr6g0043 230 CDD Rab11_like 18 181 - -
Tpr6g0043 230 Gene3D - 13 209 IPR027417 -
Tpr6g0043 230 ProSiteProfiles small GTPase Rho family profile. 14 185 - -
Tpr6g0043 230 SMART arf_sub_2 6 185 - -
Tpr6g0043 230 SMART rho_sub_3 23 187 IPR001806 GO:0003924|GO:0005525
Tpr6g0043 230 PANTHER - 1 230 - -
Tpr6g0043 230 ProSiteProfiles small GTPase Rab1 family profile. 16 219 - -
Tpr6g0043 230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 195 IPR027417 -
Tpr6g0043 230 PRINTS Transforming protein P21 ras signature 21 42 - -
Tpr6g0043 230 PRINTS Transforming protein P21 ras signature 44 60 - -
Tpr6g0043 230 PRINTS Transforming protein P21 ras signature 62 84 - -
Tpr6g0043 230 PRINTS Transforming protein P21 ras signature 124 137 - -
Tpr6g0043 230 PRINTS Transforming protein P21 ras signature 159 181 - -
Tpr6g0043 230 ProSiteProfiles small GTPase Ras family profile. 15 230 IPR001806 GO:0003924|GO:0005525
Tpr6g0043 230 Pfam Ras family 22 182 IPR001806 GO:0003924|GO:0005525
Tpr6g0043 230 SMART ras_sub_4 18 184 - -
Tpr6g0043 230 TIGRFAM small_GTP: small GTP-binding protein domain 20 174 IPR005225 GO:0005525
Tpr6g0043 230 SMART ran_sub_2 26 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0043 Tpr-Chr6 421508 424906 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0043 K07904 - gmx:100787725 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0043 6 421508 424906 Tpr6g0043 6 421508 424906 ECH
Tpr6g0043 6 421508 424906 Tpr5g1490 5 28287859 28289696 PCT