Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g1490 ATGGTCCAAGTTGAGAAGAAGCAAGATTATGATATGGAAGAGAAAATAGATTATGTGTTTAAGGTGGTTGTAATTGGTGACTCAGCAGTTGGAAAAACTCAAATACTTTCAAGATTTTCAAAGAATGAGTTTTGCTTTGACTCAAAGTCAACCATTGGAGTTGAATTTCAAACTAGGACTGTCACTATTAATGGAAAAGTAATCAAAGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGAGCAGTAACAAGTGCATACTACAGAGGTGCATTAGGTGCAATGCTAGTATATGACATAACAAAAAGACAATCATTTGATCATGTTGCTAAATGGGTTGAAGAACTAAGAGCACATGCAGATACTTCCATTGTCATCATGCTAGTTGGTAACAAAGGTGACCTTGTTGATTTGAGAATGGTTCCTACTGAAGATGCTGTTGAATTTGCAGAAGACCAAGGTTTATTCTTTTCAGAGACTTCAGCTCTTACTGGTGAGAATGTGGAGGGTGCATTTATCAAATTGTTAGAAGAGATTAATAGTGTAGTTTCTAAAAAGGCATTGGAATGTGGTAATGGTTACTATGATGCTGATAAACTTAAAGGTTCAAATATTGATGTGATTTTAGGTGGTGAATTGGAAATTAGTGAGATGAAGAAGTTGTCTTCATGTTCTTGTTGA 684 0.3596 MVQVEKKQDYDMEEKIDYVFKVVVIGDSAVGKTQILSRFSKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVAKWVEELRAHADTSIVIMLVGNKGDLVDLRMVPTEDAVEFAEDQGLFFSETSALTGENVEGAFIKLLEEINSVVSKKALECGNGYYDADKLKGSNIDVILGGELEISEMKKLSSCSC* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g1490 227 Gene3D - 12 200 IPR027417 -
Tpr5g1490 227 Pfam Ras family 21 181 IPR001806 GO:0003924|GO:0005525
Tpr5g1490 227 SMART rho_sub_3 22 186 IPR001806 GO:0003924|GO:0005525
Tpr5g1490 227 ProSiteProfiles small GTPase Ras family profile. 14 210 IPR001806 GO:0003924|GO:0005525
Tpr5g1490 227 PANTHER RAS-RELATED PROTEIN RABA3 5 227 - -
Tpr5g1490 227 PANTHER - 5 227 - -
Tpr5g1490 227 SMART rab_sub_5 20 183 - -
Tpr5g1490 227 SMART ras_sub_4 17 183 - -
Tpr5g1490 227 SMART arf_sub_2 12 184 - -
Tpr5g1490 227 ProSiteProfiles small GTPase Rab1 family profile. 15 225 - -
Tpr5g1490 227 PRINTS Transforming protein P21 ras signature 20 41 - -
Tpr5g1490 227 PRINTS Transforming protein P21 ras signature 43 59 - -
Tpr5g1490 227 PRINTS Transforming protein P21 ras signature 61 83 - -
Tpr5g1490 227 PRINTS Transforming protein P21 ras signature 123 136 - -
Tpr5g1490 227 PRINTS Transforming protein P21 ras signature 158 180 - -
Tpr5g1490 227 ProSiteProfiles small GTPase Rho family profile. 13 192 - -
Tpr5g1490 227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 184 IPR027417 -
Tpr5g1490 227 SMART ran_sub_2 25 222 - -
Tpr5g1490 227 TIGRFAM small_GTP: small GTP-binding protein domain 19 173 IPR005225 GO:0005525
Tpr5g1490 227 CDD Rab11_like 17 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g1490 Tpr-Chr5 28287859 28289696 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g1490 K07904 - gmx:100799439 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g1490 5 28287859 28289696 Tpr5g1490 5 28287859 28289696 ECH
Tpr6g0043 6 421508 424906 Tpr5g1490 5 28287859 28289696 PCT