Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g3038 ATGGCACCAGTTTGGTCTTCATGCTCAAACCGTTGTCTTCTCGCCGCAACCAATCTCCACTTCCCCTCTTATTTCACCGCCGCCATTTCCATTGCCACTCCACAACACCCAGAAAATCAACCAGAATCCATTTCATTTTTCTCCCTAAACAACAAAGAATCAATAATTTCTACCATAAAATCTATTTCCAATAAGACCCATTTGCTCCAAATCCATGCTCACATTCTCAGAACAACCCTCATTCAAGACGCTGCAGTTTCTCATCACTTCTTATGCCGTGTAGCTCTCTCTGGCCCATTGCAAAACCCCACTTATTCTCATCGTTTCTTTCAACAAATCAGTAATCCCTTTGTTTCCCATTATAACACCATGATCAGAGCTTATTCTTTCAGCGACTCACCTCAAAAGGCTCTTTTTTTATACCAAGATATGAGAAGAAGAGGCATTGCTGCTAACCCTTTAACGTCTTCTTTTGTTGTTAAGTCGTGTATCAAGTTTCTGTATCTTCTTGGAGGTGTTCAGGTTCATTGCAATATCTTCAAAGATGGGCATCAATCAGATAGCCTTTTGCTTACTGCTCTCATGGATTTGTATTCACAATGTCAGAAATATGATGATGCGTGTAAGGTGTTCGATGAGATGCCTCAGAAGGATACTGTTGCTTGGAATGTGATGATCTCTTGTTTTATTCGTAATAATCGGACACGGGATGCATTGAGCTTGTTTGATGTTATGCAGATGGAAAAGTATGAATGTGTGCCTGATGATGTTACTTGTTTACTTCTTCTTCAAGCGTGTGCTCGTTTGAATGCGTTGGAGTTCGGTGAACGGATTCATAGTTATATTATGGTACATGGTTATGGAGGTGCTCTTAATTTGTCCAATTCTCTTATATCAATGTATTCGCGGTGTGGTTGTTTAGATAAGGCTTATGATGTGTTTATGGGAATGAAGAACAAAAATGTGGTTTCATGGAGTGCAATGATATCTGGTTTGGCAGTGAATGGATATGGGAGAAAAGCTATTGAAGCATTTGAAGAGATGCAGAGAAATGGTATTCAGCCTGATGATCATACATTCACGGGTGTCCTTTCTGCTTGCAGTCATTCTGGATTGTTAGATGAGGGGGTGTCGTTTTTTGACAGAATGATCTCGGAGTTTGGAATAACTCCAGCCATCCACCATTATGGTTGCATGGTTGATCTCTTGGGACGTGCTGGCTTACTTGATAAGGCCTACCAGCTTATTACGTCCATGGAGGGAAAGCCAGATTCCACAGTGTTGAGAACCCTGCTTGGAGCTTGCAGAATTCATGGTCATGTTACACTCGGGGAACAAGTAATTGAACATTTGATTGAATTGAAAGCTCAGGAAGCTGGAGATTATGTTTTACTTCTGAATCTTTATTCATCAGCTGGACACTGGGAAAAGGTAGCAGAAGTGAGAAAACTAATGAGAGAAAAATCAATCCAAACTACACCTGGTTGTTGCACAATTGAACTGAAAGGAGCTGTACACGAGTTTGTTGTGGATGATAATTCACATTCAAGAAAAGTTGAAATTTATAACACACTGGATGAGATTAATAAGCAGCTGAAGATAGCTGGTTATGTTGTTGAACTTTCATCTGAACTACATAAGATAGATGACAAAGAAAAGGGGTATGCACTCTCTTATCATAGTGAAAAACTGGCCATTGCTTTTGGGGTTCTTGTTACTCCACAAGGCACAACATTAAGAGTGGCCTCTAATCTCCGGATATGCGTTGATTGCCACAATTTTCTGAAACTTTTTTCTGCGGTTTATAACCGTGATGTAATTCTCAGAGACCATAAGCGGTTTCACCGCTTCCGGAGAGGGCATTGCTCCTGTAATGACTATTGGTAG 1887 0.4054 MAPVWSSCSNRCLLAATNLHFPSYFTAAISIATPQHPENQPESISFFSLNNKESIISTIKSISNKTHLLQIHAHILRTTLIQDAAVSHHFLCRVALSGPLQNPTYSHRFFQQISNPFVSHYNTMIRAYSFSDSPQKALFLYQDMRRRGIAANPLTSSFVVKSCIKFLYLLGGVQVHCNIFKDGHQSDSLLLTALMDLYSQCQKYDDACKVFDEMPQKDTVAWNVMISCFIRNNRTRDALSLFDVMQMEKYECVPDDVTCLLLLQACARLNALEFGERIHSYIMVHGYGGALNLSNSLISMYSRCGCLDKAYDVFMGMKNKNVVSWSAMISGLAVNGYGRKAIEAFEEMQRNGIQPDDHTFTGVLSACSHSGLLDEGVSFFDRMISEFGITPAIHHYGCMVDLLGRAGLLDKAYQLITSMEGKPDSTVLRTLLGACRIHGHVTLGEQVIEHLIELKAQEAGDYVLLLNLYSSAGHWEKVAEVRKLMREKSIQTTPGCCTIELKGAVHEFVVDDNSHSRKVEIYNTLDEINKQLKIAGYVVELSSELHKIDDKEKGYALSYHSEKLAIAFGVLVTPQGTTLRVASNLRICVDCHNFLKLFSAVYNRDVILRDHKRFHRFRRGHCSCNDYW* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g3038 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Tpr5g3038 628 PANTHER OS08G0434000 PROTEIN 48 620 - -
Tpr5g3038 628 Pfam E motif 438 500 IPR046848 -
Tpr5g3038 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 391 IPR002885 -
Tpr5g3038 628 Gene3D Tetratricopeptide repeat domain 376 554 IPR011990 GO:0005515
Tpr5g3038 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 254 IPR002885 -
Tpr5g3038 628 TIGRFAM PPR: pentatricopeptide repeat domain 220 255 IPR002885 -
Tpr5g3038 628 TIGRFAM PPR: pentatricopeptide repeat domain 323 356 IPR002885 -
Tpr5g3038 628 TIGRFAM PPR: pentatricopeptide repeat domain 121 152 IPR002885 -
Tpr5g3038 628 TIGRFAM PPR: pentatricopeptide repeat domain 295 323 IPR002885 -
Tpr5g3038 628 TIGRFAM PPR: pentatricopeptide repeat domain 192 218 IPR002885 -
Tpr5g3038 628 TIGRFAM PPR: pentatricopeptide repeat domain 358 391 IPR002885 -
Tpr5g3038 628 Gene3D Tetratricopeptide repeat domain 276 375 IPR011990 GO:0005515
Tpr5g3038 628 Gene3D Tetratricopeptide repeat domain 175 275 IPR011990 GO:0005515
Tpr5g3038 628 Gene3D Tetratricopeptide repeat domain 74 174 IPR011990 GO:0005515
Tpr5g3038 628 Pfam PPR repeat 395 421 IPR002885 -
Tpr5g3038 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 217 IPR002885 -
Tpr5g3038 628 Pfam DYW family of nucleic acid deaminases 536 628 IPR032867 GO:0008270
Tpr5g3038 628 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 48 620 - -
Tpr5g3038 628 Pfam PPR repeat family 118 164 IPR002885 -
Tpr5g3038 628 Pfam PPR repeat family 320 368 IPR002885 -
Tpr5g3038 628 Pfam PPR repeat family 217 268 IPR002885 -
Tpr5g3038 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g3038 Tpr-Chr5 53325988 53329245 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g3038 54 628 Glycoside Hydrolase AT3G49170 34.021 1.91e-115 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g3038 - - lja:Lj0g3v0169319.1 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g3038 5 53325988 53329245 Tpr5g3038 5 53325988 53329245 ECH
Tpr2g1983 2 23674352 23676995 Tpr5g3038 5 53325988 53329245 PCT