Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1983 ATGAATTCATATAACACAACAATGACAGCACCCATTCTCCAATTAACTTCATTTTCTCCCACAAAACCCAACACACAAACAACAACACTTGTTCCATTACCTCATATCCTTTCTCTCATACCCAAATGCACTACTCTCACAGACCTAAAGCAAATTCAAGCTTATGCCATCAAAACCAATCTCCAATACAACACCAATGTTAACACAAAGTTCATAAATTTCTGCACTTCAAACCCAACAAAAGCTTCTATGGACCATGCACACAACCTGTTCGATCAAATTACTCAACCAAATATTGTTCTTTTTAACACCATGGCACGTGGGTATGCTCGCTCTAACGACCCTCTTAGAGCGATTATTTTGTTTTGTCGCGTGCTGTGGTCTGACCTTGTTCCCGATGATTACACATTTTCTTCACTTCTTAAAGCTTGTTCAAAGGTTAAGGCTTTGGAGGAAGGGAAACAGCTTCATTGCTTTGCTTTGAAACTTGGGGTTAGTGATAACATTTATGTTGTTCCGACACTTATTAATATGTATACTTCTTGTGGAGAAATTGATGATGCTAGAAGGGTTTTTGATAAGATTGATGAACCTTGTGTTGTTGCATATAATGCGATTATTACGAGTTTGGCTAGGAATAATCAACCTAATGAGGCGTTGGCTTTGTTTAGAGAGTTGCAGGAGAGTGGTCTTAAGCCAACTGATGTTACCATGCTTGTTGCACTTTCGTCCTGCGCTATGCTTGGATCGTTGGATTTGGGGAGGTGGATACACGAGTATGTTAAGAAGTACGGGTTTGATCGATATGTGAAGGTAAATACAGCTCTTATAGATATGTATGCTAAATGTGGAAGTTTGGATGATGCTGTTAATGTGTTTAGGGGTATGCCTAAGAGAGATACACAGACGTGGTCGACAATTATCATTGCTTATGCAACACATGGGGATGGTTTCCAGGCCATATCGATGTTGAAAGAAATGAAGAAGGAAAAAGTGCAGCCTGATGAGATAACTTTTTTAGGTATATTGTATGCATGCAGTCACAATGGATTGGTAGAAGAAGGTTTTGAGTATTTTCATAGTATGACCAATGAGTATGGGATTGTTCCTAGTATCAAGCATTATGGGTGTATGGTGGATTTGCTTGGTCGAGCTGGAAGGTTGGACGAAGCCTATAAATTCATAGATGAATTACCAATCAAGCCGACACCGATTCTGTGGCGGACATTGCTATCTGCTTGTAGTAGTCATGGGAATGTTGAAATGGGAAAGCAAGTAATGGAAAGAATCTCTGAATTGGATGATTCCCATGGTGGAGATTATGTTATTTTGTCGAACTTGTGTGCAAGATATGGAAAATGGGATGATGTGAATCACTTAAGGAAAATTATGATAGACAAAGGAGCTGTAAAAATTCCTGGTTGTAGCTCTATAGAGGTCAACAATGTTGTGCATGAGTTCTTTGCGGGGGATGGAATTCATTCCATTTCTACCACATTGCACCGTGCACTTGATGAGTTGATAAAGGAATTGAAGTTGGCTGGGTATGTAGCTGACACATCACTAGTCTTTCATCCAGACATGGAAGATGAAGACAAAGAAATTATCCTTCGATATCACAGTGAGAAAATTGCCATTACTTTTGGACTTCTGAATACGCCCCCCGGAACAACAATTCGTGTCGTCAAGAACCTTAGAGTCTGTGGTGATTGCCATAATGCTGCTAAATTTATATCATTGGTTTTTGGTAGGCAAATTATTCTCAGAGATGTTCAGAGGTTTCACCATTTCAAAGATGGGAAATGCTCTTGTGGTGATTACTGGTAA 1827 0.3946 MNSYNTTMTAPILQLTSFSPTKPNTQTTTLVPLPHILSLIPKCTTLTDLKQIQAYAIKTNLQYNTNVNTKFINFCTSNPTKASMDHAHNLFDQITQPNIVLFNTMARGYARSNDPLRAIILFCRVLWSDLVPDDYTFSSLLKACSKVKALEEGKQLHCFALKLGVSDNIYVVPTLINMYTSCGEIDDARRVFDKIDEPCVVAYNAIITSLARNNQPNEALALFRELQESGLKPTDVTMLVALSSCAMLGSLDLGRWIHEYVKKYGFDRYVKVNTALIDMYAKCGSLDDAVNVFRGMPKRDTQTWSTIIIAYATHGDGFQAISMLKEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHSMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSSHGNVEMGKQVMERISELDDSHGGDYVILSNLCARYGKWDDVNHLRKIMIDKGAVKIPGCSSIEVNNVVHEFFAGDGIHSISTTLHRALDELIKELKLAGYVADTSLVFHPDMEDEDKEIILRYHSEKIAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLVFGRQIILRDVQRFHHFKDGKCSCGDYW* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1983 608 Pfam PPR repeat 375 398 IPR002885 -
Tpr2g1983 608 Pfam PPR repeat 274 299 IPR002885 -
Tpr2g1983 608 Pfam PPR repeat 174 195 IPR002885 -
Tpr2g1983 608 Pfam PPR repeat 100 125 IPR002885 -
Tpr2g1983 608 SUPERFAMILY TPR-like 263 438 IPR011990 GO:0005515
Tpr2g1983 608 SUPERFAMILY TPR-like 150 294 IPR011990 GO:0005515
Tpr2g1983 608 PANTHER BNAA02G26650D PROTEIN 28 594 - -
Tpr2g1983 608 Pfam E motif 417 479 IPR046848 -
Tpr2g1983 608 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 594 - -
Tpr2g1983 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Tpr2g1983 608 Pfam DYW family of nucleic acid deaminases 515 608 IPR032867 GO:0008270
Tpr2g1983 608 TIGRFAM PPR: pentatricopeptide repeat domain 338 371 IPR002885 -
Tpr2g1983 608 TIGRFAM PPR: pentatricopeptide repeat domain 201 234 IPR002885 -
Tpr2g1983 608 TIGRFAM PPR: pentatricopeptide repeat domain 303 336 IPR002885 -
Tpr2g1983 608 TIGRFAM PPR: pentatricopeptide repeat domain 274 300 IPR002885 -
Tpr2g1983 608 Gene3D Tetratricopeptide repeat domain 36 196 IPR011990 GO:0005515
Tpr2g1983 608 Gene3D Tetratricopeptide repeat domain 207 498 IPR011990 GO:0005515
Tpr2g1983 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Tpr2g1983 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Tpr2g1983 608 Pfam PPR repeat family 198 246 IPR002885 -
Tpr2g1983 608 Pfam PPR repeat family 300 346 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1983 Tpr-Chr2 23674352 23676995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1983 38 608 Glycoside Hydrolase AT3G49170 39.724 2.07e-143 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1983 - - gmx:100817794 1007.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1983 2 23674352 23676995 Tpr2g1983 2 23674352 23676995 ECH
Tpr2g1983 2 23674352 23676995 Tpr5g3038 5 53325988 53329245 PCT