Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2927 ATGCCAGGTATTGTTACAATTGAAGGAAAAAAAATGAATGAGCTTGAGAATCCTTCTCCATCTAAGAAAATCTTAAACCAAACCAATTCACCAAGAAAACCTTTTAGTCCACAAAGTGTGGAGAGGCGTGACGTAAAAAGTTTTCATTGTCGATCACGCTCGAGTCAAAGCTTTGGATCTGATAGTGATTGGTCTTTAACTGATTCAGATTTTAGCTATCTTGATGAAGTAAAATTGAGGAATGCAGATTTTGAAATGGAGAAAAAGATGGAGAAGGATTCTAGCAGTGAAACACCAACAAAATCAAGAGCTAAGGGAAAAAGTTCTCATACAAAACCTCCTATTGAAAAGAAGAATGACAACAATAATTTGAGAAAACAAAATACAACGGTTACTACTAATGCGACAAAACCTAAGAGCGGTTCTATTGTAAGATCAAGGTCACAAAGCCGAGTAGAGAATTCCAAAGATTCCAAAGAAACGCCAACATTTGATAATCCTGAGCTAGGACCATTTTTACTAAAACAAGCGAGGGACTTGATTTCGTTAGGAGAGAATACGCAGAAAGCGCTTGAATATTCCCTTCAAGCGATGAAAATGTTTGAGAAATCTGCGAATGGGAAACCGAGTTTGGATTTGGTAATGTGTTTACATGTTACTGCAGCAATATATTGCAGTTTGGGGGATTACAATGAGGCAATTCCAATTCTAGAGCGATCGGTTGAGATTCCTATGGTCGAGGAAGGTCAACAACACGCCATTGCTAAATTCGCCAGTCACATGCAGCTTGGAGACACATATGCCATGTTAGGCCAGCTTGAGAAATCAATTATATGTTACAATAAAGGGTTGGAAGTACAAAAACTAGTTTTGGGAGAAATAGACCCAAGAGTTGGTGAAACTTGTAGGTATGTGGCAGAAGCTAATTTTCAAGCATTGCAATTTGATGAGGCAGAAAGGTTGTGTCAAGTGGCTCTTGATATTCACAGAGAAAATGGTTCACCCTCTACTCTTGAAGAAGCGGCGGATAGAAGGTTAATGGGACTTATATGTGAAACTAATGGAAATCATGAAGCAGCATTGGAACACCTTGTTTTAGCAAGCATGGCAATGGTATCAAATGGCCAAGAGGTTGAAGTAGCGTCCGTTGATTGCAGCATTGGAGACACATTCCTATCGTTGGCTCGATACGATGAGGCCATCTTGGCATATAAAAAGGCGTTAGCGGTTTTCAAGACTCACAAAGGAGAGAATCATCCTGCGGTTGGATCGGTCTATGTACGCTTGGCTGAGTTGTATACTAGGACATGGAAAATAAAGGAATCAAAATCATATTGTGAAAATGCACTTAAAATCTATGAAAATCCCATGTCTGGTGTCCCTTCTGACGAGATTGCCAGTGGTTTTGTGAATGTTGCAGCTATTTATGAGTCGATGAATGAGCTTGAACAAGCACTCAAGTTACTGCATAAGGCACTAGAGATACATAATGATGCTCCTGGTCAGCAAAACACAATAGCAGGAATTGAAGCTCAAATGGGAGTCATATACTATGTATTGGGAAACCAAACTGAATCTTACAATGCTTTTAAGAATGCCATCTCAAAGCTTCGTGCCACGGGAGACAAAAAATCGGCTTACTTTGGTATTGTTCTTAATCAAATGGGTCTTTGTTGTGTGGAGCTCTGCGAGTTAACCGAGGCTGCAAAATTATTTGAAGAAGCCAAGATTGTTCTGGAACAAGAGTATGGTCCGTATCACCCTGAAACTATTGGGGTATATAGCAATCTGGCTGGCACATATGATGCACTTGGCAGGGTGAATGATGCAATTGATATTATGGAGTACATTGTTGTTGTGAGGGAGGAAAAACTTGGGACAGCACACTTTGATGTTGTTGATGAGAAAAGAAGGTTGGATGTGTTGTTGAAGGAAGCAGGTAGAGTTCGGAACAGAAAAACCAAGTCACTTGAGCTCCTTCTAGATGTCTTTGATGATTAA 2001 0.3988 MPGIVTIEGKKMNELENPSPSKKILNQTNSPRKPFSPQSVERRDVKSFHCRSRSSQSFGSDSDWSLTDSDFSYLDEVKLRNADFEMEKKMEKDSSSETPTKSRAKGKSSHTKPPIEKKNDNNNLRKQNTTVTTNATKPKSGSIVRSRSQSRVENSKDSKETPTFDNPELGPFLLKQARDLISLGENTQKALEYSLQAMKMFEKSANGKPSLDLVMCLHVTAAIYCSLGDYNEAIPILERSVEIPMVEEGQQHAIAKFASHMQLGDTYAMLGQLEKSIICYNKGLEVQKLVLGEIDPRVGETCRYVAEANFQALQFDEAERLCQVALDIHRENGSPSTLEEAADRRLMGLICETNGNHEAALEHLVLASMAMVSNGQEVEVASVDCSIGDTFLSLARYDEAILAYKKALAVFKTHKGENHPAVGSVYVRLAELYTRTWKIKESKSYCENALKIYENPMSGVPSDEIASGFVNVAAIYESMNELEQALKLLHKALEIHNDAPGQQNTIAGIEAQMGVIYYVLGNQTESYNAFKNAISKLRATGDKKSAYFGIVLNQMGLCCVELCELTEAAKLFEEAKIVLEQEYGPYHPETIGVYSNLAGTYDALGRVNDAIDIMEYIVVVREEKLGTAHFDVVDEKRRLDVLLKEAGRVRNRKTKSLELLLDVFDD* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2927 666 ProSiteProfiles TPR repeat profile. 466 499 IPR019734 GO:0005515
Tpr5g2927 666 Pfam Tetratricopeptide repeat 550 614 - -
Tpr5g2927 666 Pfam Tetratricopeptide repeat 185 243 - -
Tpr5g2927 666 Pfam Tetratricopeptide repeat 380 455 - -
Tpr5g2927 666 PANTHER KINESIN LIGHT CHAIN 1 665 - -
Tpr5g2927 666 SUPERFAMILY TPR-like 387 628 IPR011990 GO:0005515
Tpr5g2927 666 SMART tpr_5 466 499 IPR019734 GO:0005515
Tpr5g2927 666 SMART tpr_5 257 290 IPR019734 GO:0005515
Tpr5g2927 666 SMART tpr_5 591 624 IPR019734 GO:0005515
Tpr5g2927 666 SMART tpr_5 423 456 IPR019734 GO:0005515
Tpr5g2927 666 SMART tpr_5 299 332 IPR019734 GO:0005515
Tpr5g2927 666 SMART tpr_5 549 582 IPR019734 GO:0005515
Tpr5g2927 666 SMART tpr_5 507 540 IPR019734 GO:0005515
Tpr5g2927 666 SMART tpr_5 214 247 IPR019734 GO:0005515
Tpr5g2927 666 SMART tpr_5 341 374 IPR019734 GO:0005515
Tpr5g2927 666 SMART tpr_5 381 414 IPR019734 GO:0005515
Tpr5g2927 666 Gene3D Tetratricopeptide repeat domain 87 258 IPR011990 GO:0005515
Tpr5g2927 666 SUPERFAMILY TPR-like 214 499 IPR011990 GO:0005515
Tpr5g2927 666 MobiDBLite consensus disorder prediction 85 169 - -
Tpr5g2927 666 Pfam Tetratricopeptide repeat 259 287 IPR019734 GO:0005515
Tpr5g2927 666 MobiDBLite consensus disorder prediction 1 64 - -
Tpr5g2927 666 Gene3D Tetratricopeptide repeat domain 259 366 IPR011990 GO:0005515
Tpr5g2927 666 ProSiteProfiles TPR repeat profile. 381 414 IPR019734 GO:0005515
Tpr5g2927 666 MobiDBLite consensus disorder prediction 124 149 - -
Tpr5g2927 666 Gene3D Tetratricopeptide repeat domain 544 651 IPR011990 GO:0005515
Tpr5g2927 666 Gene3D Tetratricopeptide repeat domain 367 543 IPR011990 GO:0005515
Tpr5g2927 666 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 665 - -
Tpr5g2927 666 Coils Coil 479 499 - -
Tpr5g2927 666 MobiDBLite consensus disorder prediction 19 36 - -
Tpr5g2927 666 MobiDBLite consensus disorder prediction 85 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2927 Tpr-Chr5 52317041 52319486 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2927 - - gmx:100813461 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2927 5 52317041 52319486 Tpr3g2787 3 28661608 28665687 ECH
Tpr5g2927 5 52317041 52319486 Tpr5g2927 5 52317041 52319486 ECH
Tpr5g2927 5 52317041 52319486 Tpr5g2927 5 52317041 52319486 PCT