Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2787 ATGCCGGGAATTGTTACAAACGGGGTTCATGATGAAGGGGAAGGTAATGGGGTGAATGGGAACCACTCCCCCGCTAAGGAAATCGTAACTTCAATCAAGTCTCCGAGGAGTTCAATGGGTTCGCAGAGACGTCAAACTGCTGGTCCTAATTTCCTGGCTGATGAGGCGGTTGAGCCTTCGATCGAGCAGCTGTATGAAAATGTGTGTGATATGCAGAGTTCTGATCAGTCTCCCTCAAGGCAAAGTTTTGGATCTGATGGTGATGAGTCTAGAATTGATTCGGAATTGCACCATCTAGTTGGTGGGCGGATGAGGGAGTTGGAGATAATGGAAGAGGAGGTGGAGGTGGAGAGAAGGCCGGGAGAGAGTTCTAGTGGTGAAACGTCTTCTGGAATTGGTAGTTTATCCAATGGTAAGAAGTTGGCTAAGGTGGCTGTGGTTCGATCTGGTAGTAATAGTCCAGTTTCCTCAGAAAAATCCGTCAAAGCATTGAATTCACCGACGGGCTCTGACAGTTCACCAAAATCAAAACCCAAAGGAACTGACAGTTCACCAAAATCAAAACCAAAAGGAAAAAGTCCTGCAAAACCTCCTCTACAGAAAAAGAATGGTAGTCCTCTGAGAAAACAAACTAGCGGGGTTAATGGGATGAAGAATTCAAAGAATTCTCCTTTGAGAAAGTCAGTTTCACAGAATCGCATTGACTATTCGATTGAATCAGCATTAGATAAACCAGATCGGGCACCAATATTACTAAAGCAAGCAAGAGATCTTATGTCATCCGGAGATAATCCACACAAAGCTCTTGAATCAGCTCTTCAAGCAATGAAACTGTTTGAGAAGTTTGGTAATGGTAAACCGAGTTTGGAACTGGTCATGTGTTTACATGTTACAGCAGCAATATACTGCAGCTTGGGTCAATACAACGAGGCAATTCCGATGCTGGAGCATTCCATTGAGATTCCTGATACTGGGGAAAGTCAACAGCATGCTCTTGCTAAATTTGCCGGTCACATGCAACTGGGAGACACCTATGCTATGTTGGGCCAACTTGAGAATTCAATTATGTGCTACACTGCTGGTTTTGAAGTCCAAAGAGGGATTTTGGGAGAAACAGACCCAAGAGTTGGTGAAACTTGTCGGTATTTGGCCGAAGCTAATGTTCAAGCTTTGCAATTTAATGAAGCAGAGAGGCTCTGTCAAATGGCTCTTGACATTCATAGAGCAAATAGTTCATCTGCATCTATTGAAGAGGCAGCCGATAGGAGGCTTATGGGCCTTATATATGAAACAAAGGGGGACCATGAAGCAGCTCTTGAACACCTTGTTTTAGCCAGCATGGCAATGGTAGCGAATGGTCAGGAAGTAGAAGTGGCATCTGTTGACTGCAGCATTGGAGACGCATACTTATCCTTGTCTCGATATGATGAGGCTATCTTCGCGTATGAAAAAGCACTAACTGTTTTCATGACCAACAAAGGAGAGAATCATCCAACAGTGGGATCAGTCTTTGTACGTTTGGCCGAATTGTATAATAGGACAGGGAAGATAAGGGAATCAAAATCATATTGCGAGAGTGCACTTAAAATATATGAGAATCCAATGCCTGGAGTTACTCCAGAGGAGATTGCTAGCGGTCTTACGAATCTGTCAACTATCTATGAGTCAATGAATGAGGTTGAACAGGCACTCAAGTTACTGCAGAAAGCACTGGAGATATATAATAATGCCCCTGGTCAGCAAGGTGCAATAGCAGGGATTGAAGCTCAGCTAGGGGTCATGTACTACACATTGGGAAACTATACTGAATCTTACAACACTTTGAAAAATGCTATTTCGAAGCTTCGTGCTATCGGAGAGAAGAAATCATCCTTTTTTGGTATTGCTCTTAATCAAATGGGACTTGCCTGTGTGCAGCGTTATGCCTTAAGTGAGGCTATAGTATTATTTGAGGAAGCAAAGAGTATTTTGGAACTGGAGTTGGGACCTTATCACCCTGACACTCTTGGAGTATATAGTAATCTTGCAGGCACATATGATGCAATTGGCAGGCTTGATGATGCAATTCAAATTTTGGAGCATGTTGTTAGTATGAGGGAGGAAAAGCTTGGGACAGCAAATCCTGACGTGGCCGATGAGAAGAGAAGGTTGAGTGAGTTATTGAAGGAAGCAGGTAGAGTTCGGAGCAGAAAAGTCAGGTCACTAGAGAACCTTTTTGACGGAAATGCTCCCACTTTAAACAACCTTGTTATCAAGGCCTGA 2262 0.4346 MPGIVTNGVHDEGEGNGVNGNHSPAKEIVTSIKSPRSSMGSQRRQTAGPNFLADEAVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELHHLVGGRMRELEIMEEEVEVERRPGESSSGETSSGIGSLSNGKKLAKVAVVRSGSNSPVSSEKSVKALNSPTGSDSSPKSKPKGTDSSPKSKPKGKSPAKPPLQKKNGSPLRKQTSGVNGMKNSKNSPLRKSVSQNRIDYSIESALDKPDRAPILLKQARDLMSSGDNPHKALESALQAMKLFEKFGNGKPSLELVMCLHVTAAIYCSLGQYNEAIPMLEHSIEIPDTGESQQHALAKFAGHMQLGDTYAMLGQLENSIMCYTAGFEVQRGILGETDPRVGETCRYLAEANVQALQFNEAERLCQMALDIHRANSSSASIEEAADRRLMGLIYETKGDHEAALEHLVLASMAMVANGQEVEVASVDCSIGDAYLSLSRYDEAIFAYEKALTVFMTNKGENHPTVGSVFVRLAELYNRTGKIRESKSYCESALKIYENPMPGVTPEEIASGLTNLSTIYESMNEVEQALKLLQKALEIYNNAPGQQGAIAGIEAQLGVMYYTLGNYTESYNTLKNAISKLRAIGEKKSSFFGIALNQMGLACVQRYALSEAIVLFEEAKSILELELGPYHPDTLGVYSNLAGTYDAIGRLDDAIQILEHVVSMREEKLGTANPDVADEKRRLSELLKEAGRVRSRKVRSLENLFDGNAPTLNNLVIKA* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2787 753 MobiDBLite consensus disorder prediction 23 48 - -
Tpr3g2787 753 ProSiteProfiles TPR repeat profile. 544 577 IPR019734 GO:0005515
Tpr3g2787 753 Gene3D Tetratricopeptide repeat domain 234 331 IPR011990 GO:0005515
Tpr3g2787 753 Coils Coil 557 577 - -
Tpr3g2787 753 Pfam Tetratricopeptide repeat 628 701 - -
Tpr3g2787 753 MobiDBLite consensus disorder prediction 204 231 - -
Tpr3g2787 753 ProSiteProfiles TPR repeat profile. 459 492 IPR019734 GO:0005515
Tpr3g2787 753 Gene3D Tetratricopeptide repeat domain 445 620 IPR011990 GO:0005515
Tpr3g2787 753 Gene3D Tetratricopeptide repeat domain 621 730 IPR011990 GO:0005515
Tpr3g2787 753 SMART tpr_5 335 368 IPR019734 GO:0005515
Tpr3g2787 753 SMART tpr_5 544 577 IPR019734 GO:0005515
Tpr3g2787 753 SMART tpr_5 669 702 IPR019734 GO:0005515
Tpr3g2787 753 SMART tpr_5 459 492 IPR019734 GO:0005515
Tpr3g2787 753 SMART tpr_5 585 618 IPR019734 GO:0005515
Tpr3g2787 753 SMART tpr_5 377 410 IPR019734 GO:0005515
Tpr3g2787 753 SMART tpr_5 419 452 IPR019734 GO:0005515
Tpr3g2787 753 SMART tpr_5 627 660 IPR019734 GO:0005515
Tpr3g2787 753 SMART tpr_5 292 325 IPR019734 GO:0005515
Tpr3g2787 753 SMART tpr_5 501 534 IPR019734 GO:0005515
Tpr3g2787 753 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 742 - -
Tpr3g2787 753 SUPERFAMILY TPR-like 264 572 IPR011990 GO:0005515
Tpr3g2787 753 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 742 - -
Tpr3g2787 753 MobiDBLite consensus disorder prediction 86 122 - -
Tpr3g2787 753 Pfam MalT-like TPR region 388 581 IPR041617 -
Tpr3g2787 753 MobiDBLite consensus disorder prediction 1 231 - -
Tpr3g2787 753 Gene3D Tetratricopeptide repeat domain 332 444 IPR011990 GO:0005515
Tpr3g2787 753 SUPERFAMILY TPR-like 463 698 IPR011990 GO:0005515
Tpr3g2787 753 MobiDBLite consensus disorder prediction 149 180 - -
Tpr3g2787 753 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2787 Tpr-Chr3 28661608 28665687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2787 464 729 Glycosyltransferase AT3G04240 22.180 1.49e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2787 - - mtr:MTR_3g077950 1170.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2927 5 52317041 52319486 Tpr3g2787 3 28661608 28665687 ECH
Tpr3g2787 3 28661608 28665687 Tpr3g2787 3 28661608 28665687 ECH