Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2677 ATGAGAAACGATTCTCCTTATACACCTCTTCTCAATAATGGGTCCCACCACAATAACCGTAATAAACAGATTCATCTCATCGTTTTTGGATTCTTCTTATTAGCTTCGTTAATCACGTTTAGTGGCTACATAGCCTCTAACAACAACGTAGTATCTGTTGTTCCTCATGCTGACGTGTCATTTTCCGATGAAGTTACGAAACCAAACACGGTTGTTTCTCGAGGTGTTTCCGCTGGTGTGTCGGAGAAGTCAAATATGTTTCTCTCCGCTGCTGGTGGTAATAAGGTTGTTGGAGAATCTGAATCTTTTCCTTGGAATAATACTATGTTGTCGTGGCAAAGAACAGCTTTTCATTTTCAGCCTGAAAAGAATTGGATGAATGATCCTAACGGTCCTATGTACTACAAGGGATGGTACCATTTTTTCTACCAATACAATCCAAACGGCGCAGTTTGGGGCGACATAGTTTGGGGGCACGCTGTATCAAGGGACATGATCCATTGGCTTCACCTTCCGCTAGCAATGGTGGCGGATCAATGGTATGATAGTAACGGTGTTTGGACAGGCTCTGCTACCCTCTTACCTGACGGTCAAGTCATCATGTTATATACTGGTTCGACCAACGAATCAGTGCAAGTTCAAAACCTTGCATACCCTGCTGATCTCAATGACCCTCTTCTCGTTGATTGGATCAAATACCCTTCCAATCCGGTTCTCGTCCCTCCACCAGGCATTCTTCCAAAGGACTTTCGTGACCCAACAACTGCGTGGCTCACCTCCGAAGGAAAATGGCGCATCACCATAGGCTCCAAGCTTAACAAAACTGGCATTGCTTTGGTTTATGATACGGTCGATTTCAAAACCTATGAGCGTAAAGAGAATTTGCTTAATGCTGTTCCTGGCACCGGTATGTGGGAGTGTGTGGACTTCTTCCCCGTTTCTAAGAAATCTGAAAATGGTTTGGATACTTCCTTTAAAGGGGATGATGTTAAGCATGTGATGAAGGTGAGTTTGGATGATGATAGACATGATTATTATGCATTAGGGACTTATGATGAGAAGAAGGTTCAGTTTATAGCTGATGATCTTAAAAATGATGTTGGTATTGGATTGAGGTATGATTATGGTATATTCTATGCTTCCAAGACATTTTATGATCAGAAAAAGGATAGGAGAGTGTTGTGGGGTTGGATTGGAGAATCTGATAGCGAATACGCTGATGTCGCCAAAGGTTGGGCTTCAGTTCAGAGCATTCCAAGAATCGTGAAGCTTGATAAGAAGACTGGTAGCAACTTACTTCAATGGCCTGTTGCAGAAGTCGAAAGTTTGAGATTAAAAAGCGACGAATTTAAAAACTTGAAGGTCAAGCCCGGAGCAGTAGTGTCACTAGATATTGAAACTGCCACACAGTTGGACATTATAGCTGAGTTTGAGATAGACAAGGAAGCTCTAGAGAAAACAGGTGAATCCAATGTAGAGTATGAGTGCAGCACTAGTGGAGGAGCTTCTAAACGTGGTGCCTTAGGACCTTTTGGTCTTTATGTTTTGGCAGATGGTGATCTTTCTGAGTACACTCCTGTGTACTTTTATGTTGTTAAAGGAAGCAATGGAAAACTTAAGACTTCTATCTGCTCTGATCAATCAAGATCTTCTCTTGCAAATGATGTTCATAAACAAATCTATGGAAGTGTAGTTCCAGTACTTGAAGGAGAAAAATTGTCCTTAAGAATACTTGTGGACCATTCTATAGTTGAAAGCTTTGCTCAAGGTGGAAGGACATGTATAACATCAAGAGTTTATCCAACAAGAGCAATTTATGGAGCTGCTAAATTGTTCATATTCAACAATGCTATTGAGACTAATGTCACTGCCTCTCTCAAAGTTTGGCAGATGAATTCTGCATTTATAAGACCATACCATCCTGACCAAAAGAGATGA 1938 0.4133 MRNDSPYTPLLNNGSHHNNRNKQIHLIVFGFFLLASLITFSGYIASNNNVVSVVPHADVSFSDEVTKPNTVVSRGVSAGVSEKSNMFLSAAGGNKVVGESESFPWNNTMLSWQRTAFHFQPEKNWMNDPNGPMYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIHWLHLPLAMVADQWYDSNGVWTGSATLLPDGQVIMLYTGSTNESVQVQNLAYPADLNDPLLVDWIKYPSNPVLVPPPGILPKDFRDPTTAWLTSEGKWRITIGSKLNKTGIALVYDTVDFKTYERKENLLNAVPGTGMWECVDFFPVSKKSENGLDTSFKGDDVKHVMKVSLDDDRHDYYALGTYDEKKVQFIADDLKNDVGIGLRYDYGIFYASKTFYDQKKDRRVLWGWIGESDSEYADVAKGWASVQSIPRIVKLDKKTGSNLLQWPVAEVESLRLKSDEFKNLKVKPGAVVSLDIETATQLDIIAEFEIDKEALEKTGESNVEYECSTSGGASKRGALGPFGLYVLADGDLSEYTPVYFYVVKGSNGKLKTSICSDQSRSSLANDVHKQIYGSVVPVLEGEKLSLRILVDHSIVESFAQGGRTCITSRVYPTRAIYGAAKLFIFNNAIETNVTASLKVWQMNSAFIRPYHPDQKR* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2677 645 Gene3D Glycosyl hydrolase domain; family 43 122 447 IPR023296 -
Tpr5g2677 645 ProSitePatterns Glycosyl hydrolases family 32 active site. 118 131 IPR018053 GO:0004553|GO:0005975
Tpr5g2677 645 SMART glyco_32 118 591 IPR001362 GO:0004553|GO:0005975
Tpr5g2677 645 SUPERFAMILY Arabinanase/levansucrase/invertase 111 437 IPR023296 -
Tpr5g2677 645 CDD GH32_Fruct1-like 124 424 - -
Tpr5g2677 645 Pfam Glycosyl hydrolases family 32 N-terminal domain 118 436 IPR013148 -
Tpr5g2677 645 Gene3D - 448 631 - -
Tpr5g2677 645 SUPERFAMILY Concanavalin A-like lectins/glucanases 436 635 IPR013320 -
Tpr5g2677 645 Pfam Beta-fructofuranosidase, N-terminal domain 13 110 IPR021792 GO:0004564
Tpr5g2677 645 Pfam Glycosyl hydrolases family 32 C terminal 439 630 IPR013189 -
Tpr5g2677 645 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 19 640 - -
Tpr5g2677 645 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 19 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2677 Tpr-Chr5 48986196 48992002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g2677 5 645 Glycoside Hydrolase AT1G12240 65.191 0.0 854
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2677 K01193 - gmx:100799487 1041.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2677 5 48986196 48992002 Tpr5g2677 5 48986196 48992002 ECH
Tpr2g3788 2 40804787 40808824 Tpr5g2677 5 48986196 48992002 PCT