Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2490 ATGGCAACAAGTAACGGTTCAAGTTCCACGGTGTCTGACATTGATGATAACCCCACCATTGCTGGAGGTGTTAGGGATGTTTACGGCGAGGATAGGGCCACTGAGGATCAGTTTGTTACTCCTTGGAGTGTTTCTGTTTCCAGTGGATATACTTTGTTGAGAGATCCACATTTTAATAAAGGACTAGCCTTCACTGAGACAGAGAGGGATGCACACTACTTGCGTGGTCTTCTTCCCCCAACTGTTATTTCACAAGAAACTCAGGTGAAGAAAATGATCCAAAACATAAGACAGTACCAAGTTCCATTGCAGAAGTACATGGCAATGATGGATCTTCAGGAGAGAAATGAAAGGCTGTTTTACAGGCTTTTAATCGATCATGTTGAGGAGTTACTACCGTTTGTTTATACTCCAACTGTTGGTGAAGCTTGCCAGAAATATGGATCCATCTTCATGCATCCTCAGGGTCTTTACATAAGCTTGAAAGAGAAAGGAAGGATTCTTCAAGTGCTTAGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTAACTGACGGAGAGCGGATCTTGGGTCTTGGGGATCTTGGCTGTCAAGGGATGGGAATACCAGTAGGAAAACTTTCTTTATACACTGCACTTGGTGGAGTCCGCCCTTCTTCCTGCTTGCCTATTACCATTGATGTTGGTACAAACAATGAGAAGTTGTTGAATGACGAATTATACATAGGGCTCAAACATAAACGAGTAACTGGGAAGGAATATGCTGAACTTATTGATGAATTCATGACAGCATGCAAGCAAAATTATGGAGAAAAACTCCTCATCCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAAATATAGGACAACGCATCTTGTTTTTAATGATGATATTCAGGGAACTGCATCAGTGGTCCTTGCAGGACTTGTTTCGGCTCTGAAATTGGTTGGGGGAAGCTTGGACGAGCATCGTTTCTTATTCCTTGGTGCTGGAGAGGCAGGCACTGGAATCGCAGAACTCATAGCACTCGAAATATCAAAACGGACAAATTCCCAGCTGGAGGAAGTGCGCAAGAATATTTGGTTGGTGGACTCGAAGGGCTTGATTGTGAGTTCTCGCAAAGAATCACTCCAACATTTTAAGAAGCCCTGGGCTCATGACCACGAACCTGTTACGGAACTTGTAGATGCTGTAAATCAAATTAAGCCAACAGTGTTGATCGGAACATCAGGGCAAGGGAGAACTTTTACGCAAGATGTCATTAAAGCGATGGCCTCAATTAATGAGAAACCAATTATTCTTTCACTATCCAACCCAACATCTCAGTCAGAATGTACTGCCGAAGAAGCTTATACATGGACCGAGGGACGAGCCATTTTTGCTAGCGGTAGCCCATTTGCCCCAGTTGAATATGATGGAAAAGTGTTTGTGCCTGGCCAGTCTAATAACGCGTACATCTTTCCTGGATTTGGTCTCGGTTTAATAATGTCTGGTACAATCCGAGTGCACGATGACCTGCTTCTGGCAGCTTCGGAGGCTTTGGCTTCACAGGTGACGCAGGAAGACTATGACAGGGGACTCATATATCCACCATTCACTAGCATCAGAAAGATTTCGGCACACATAGCTGCCAAAGTGGCTAGTAAGGCCTATGAGCTTGGTTTGGCGACTCGCCTTCCTCGACCAAAAGATTTGTTGAGTTTTGCGGAGAGCTGTATGTATACCCCAACTTACAGAAGCTACCGGTGA 1767 0.4403 MATSNGSSSTVSDIDDNPTIAGGVRDVYGEDRATEDQFVTPWSVSVSSGYTLLRDPHFNKGLAFTETERDAHYLRGLLPPTVISQETQVKKMIQNIRQYQVPLQKYMAMMDLQERNERLFYRLLIDHVEELLPFVYTPTVGEACQKYGSIFMHPQGLYISLKEKGRILQVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDELYIGLKHKRVTGKEYAELIDEFMTACKQNYGEKLLIQFEDFANHNAFDLLEKYRTTHLVFNDDIQGTASVVLAGLVSALKLVGGSLDEHRFLFLGAGEAGTGIAELIALEISKRTNSQLEEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHDHEPVTELVDAVNQIKPTVLIGTSGQGRTFTQDVIKAMASINEKPIILSLSNPTSQSECTAEEAYTWTEGRAIFASGSPFAPVEYDGKVFVPGQSNNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVTQEDYDRGLIYPPFTSIRKISAHIAAKVASKAYELGLATRLPRPKDLLSFAESCMYTPTYRSYR* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2490 588 Pfam Malic enzyme, NAD binding domain 304 557 IPR012302 GO:0051287
Tpr5g2490 588 Gene3D - 302 588 - -
Tpr5g2490 588 ProSitePatterns Malic enzymes signature. 300 316 IPR015884 GO:0004471
Tpr5g2490 588 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 26 303 IPR046346 -
Tpr5g2490 588 Gene3D - 47 301 IPR037062 GO:0004471
Tpr5g2490 588 PRINTS Malic enzyme signature 119 143 IPR001891 GO:0004470|GO:0004471
Tpr5g2490 588 PRINTS Malic enzyme signature 179 208 IPR001891 GO:0004470|GO:0004471
Tpr5g2490 588 PRINTS Malic enzyme signature 215 237 IPR001891 GO:0004470|GO:0004471
Tpr5g2490 588 PRINTS Malic enzyme signature 275 293 IPR001891 GO:0004470|GO:0004471
Tpr5g2490 588 PRINTS Malic enzyme signature 300 316 IPR001891 GO:0004470|GO:0004471
Tpr5g2490 588 PRINTS Malic enzyme signature 331 347 IPR001891 GO:0004470|GO:0004471
Tpr5g2490 588 PRINTS Malic enzyme signature 434 450 IPR001891 GO:0004470|GO:0004471
Tpr5g2490 588 PIRSF ME 23 588 IPR001891 GO:0004470|GO:0004471
Tpr5g2490 588 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 304 587 IPR036291 -
Tpr5g2490 588 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 20 588 - -
Tpr5g2490 588 Pfam Malic enzyme, N-terminal domain 113 294 IPR012301 GO:0004471
Tpr5g2490 588 SMART malic_2 113 294 IPR012301 GO:0004471
Tpr5g2490 588 PANTHER MALIC ENZYME-RELATED 20 588 - -
Tpr5g2490 588 CDD NAD_bind_1_malic_enz 304 582 - -
Tpr5g2490 588 SMART Malic_M_2 304 557 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2490 Tpr-Chr5 46591347 46597390 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2490 K00029 - gmx:100791514 1037.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2490 5 46591347 46597390 Tpr7g4882 7 56771837 56776759 ECH
Tpr3g0439 3 4557012 4562383 Tpr5g2490 5 46591347 46597390 ECH
Tpr5g2490 5 46591347 46597390 Tpr5g2490 5 46591347 46597390 ECH
Tpr5g2490 5 46591347 46597390 Tpr7g0386 7 3211384 3215943 ECH
Tpr7g4882 7 56771837 56776759 Tpr5g2490 5 46591347 46597390 PCT