Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g2294 ATGAATTTGCAACAAGTTGGGCAGCCTAAATCATCTAATGGATATGGTCGTCGGAAATCTGATAAGGACGGGGCATCTAAATCGGACAGTAAGATTCCCCCAGGAAAATCAAATGCTGGCAGATTAGCGAGTACAGGTGCAGTGACTGGTAGTAAAGGTGGTAGTTATGAGAGTCCTTCGCGTGATCGACTAGTCTATTTAACAACATGCCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCTACAAATACTGAGAAAGATTTTGGAGTCATTTTGAAAATGGCATGCTTGACAAAGGATGGCTCTTCGCAAGGACAGAGCTCTGGTGTTGAATTTGTCAGCAAAGCACCTTCTAAGACTTTAATTATACCTGGCAAAGAACTTGTACAAGTCATAGCAAAGGATGTTGCTGTTTCTAGAGGTGACCTAGCCAGTGAATCCAACTATGATGTGCATCAGGAGATCATGGTTGATTCAGTAATATCTCAACCTCGTCATGTTGAGGCAGGGAGAGAATTACACCGATGGGTACCTGATGAAGATGTTCCACAATGCCCTGAACTGGACAATATATTTGATGGCTCCTGGAATAGGGGATGGGATCAGTTTGAAACAAATAAAATGTTGTTTGGGGTGAAAAGCACATTTGATGAGGAACTCTATACAACAAAGCTTGAAAAAGGGCCTCAGATGAGAGAATTGGAAATGCAAGCTCTAAGAATAGCAAGGGAAATTGAGGGTGAGGATACCCAAGATCTTCACCTAGCAGAGGAACGAGGCCTTTACCCTGATGACTTTGACATTGATGAAGAGACCAGATTCTCTTCTGTATATAGGGGTAAAGGTGTTGACGATGAATACAATGAAAATGAAGACAATTTGTTGGATTCACACAATTCTGAAACGTTTGGTGATGTGTCTGATTCAGTCATAAAGAGACCAGGAAAGGTAAGTGGTGGGAAAGGCAAAAATGGAGCTCAAACATGGTCAAATTTCTCCTTTGTGTCATCTCAGTCAAAAACTGGTGGGGATTTATGCCACTCTGGTGCTTATGATCATGCTAAGCAGTTACCATCTGAACTCCCTGGCCAAAGTTACTCATTTTCAGATGGGGAGAGCAGGATTCAGGATAATTCTGTTTGTGATCTACACGGAGCCAATGGTAACACCAAGGAAGAAAATCAGAAGCAAGCTGAAGATGTCAAGCCGTTGAAATACGAGGATTTACACCCAGCACTCAACTTGAAGAAAGATGACTCTGATAAAGGGGGATTATCTTCTACTAATGCCCCCTCGTATGCCTCGTCTACTCATATTTCATCGAAGATTGATGAAAAGACTGGATCACATGGAGACTTGACTGGGGGTTCAGATTCTGGCAAAGCAAGTTGGGAAACGAAGCCCTTAAATTCACGTGGAAGATCGGAAACTCGTGTATCATCTGGTTCAGATTCTGTAGCAGGTGTGGCAACATATTCTGGTCCTAGTCTATCTCCAAGTTCTTCACTTGGTTCACTGTCTTCCGAAAAATCAACTCTGAATCCCTATGCGAAGGAATTTAAGCTGAACCCTAATGCTAAGAGTTTTGTACCGTCTCAAGCATCTGTTAGGCCTCGCTCCCCAGTGTCTGATGGTTCCTTCTATTTCCCAGCTAACGTATCTACTGTACCGAGTATGCCAACCATGCCAATGGGTGTTGGAGTTGGAACTTCCTTTGCCGGGCAACAGCCTATCATGTATAATCCACAGGCAGCACAAATGCCACCCCAACCATATTTTCATCAGAATGGGCCACAGTATGGACAACTTCATGGTCATCCTAGACAAGTTCTATACATGCCCGGTTTCCTACCTGAGACGCCATATAAGGGACGGAACTATTAA 1917 0.4319 MNLQQVGQPKSSNGYGRRKSDKDGASKSDSKIPPGKSNAGRLASTGAVTGSKGGSYESPSRDRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATNTEKDFGVILKMACLTKDGSSQGQSSGVEFVSKAPSKTLIIPGKELVQVIAKDVAVSRGDLASESNYDVHQEIMVDSVISQPRHVEAGRELHRWVPDEDVPQCPELDNIFDGSWNRGWDQFETNKMLFGVKSTFDEELYTTKLEKGPQMRELEMQALRIAREIEGEDTQDLHLAEERGLYPDDFDIDEETRFSSVYRGKGVDDEYNENEDNLLDSHNSETFGDVSDSVIKRPGKVSGGKGKNGAQTWSNFSFVSSQSKTGGDLCHSGAYDHAKQLPSELPGQSYSFSDGESRIQDNSVCDLHGANGNTKEENQKQAEDVKPLKYEDLHPALNLKKDDSDKGGLSSTNAPSYASSTHISSKIDEKTGSHGDLTGGSDSGKASWETKPLNSRGRSETRVSSGSDSVAGVATYSGPSLSPSSSLGSLSSEKSTLNPYAKEFKLNPNAKSFVPSQASVRPRSPVSDGSFYFPANVSTVPSMPTMPMGVGVGTSFAGQQPIMYNPQAAQMPPQPYFHQNGPQYGQLHGHPRQVLYMPGFLPETPYKGRNY* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g2294 638 SMART LsmAD_2 221 291 IPR009604 -
Tpr5g2294 638 MobiDBLite consensus disorder prediction 435 453 - -
Tpr5g2294 638 MobiDBLite consensus disorder prediction 15 29 - -
Tpr5g2294 638 MobiDBLite consensus disorder prediction 463 497 - -
Tpr5g2294 638 Pfam LsmAD domain 221 290 IPR009604 -
Tpr5g2294 638 PANTHER ATAXIN-2 HOMOLOG 4 627 - -
Tpr5g2294 638 PANTHER ATAXIN 2-RELATED 4 627 IPR045117 GO:0003723
Tpr5g2294 638 MobiDBLite consensus disorder prediction 424 497 - -
Tpr5g2294 638 MobiDBLite consensus disorder prediction 1 55 - -
Tpr5g2294 638 Pfam Ataxin 2 SM domain 61 145 IPR025852 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g2294 Tpr-Chr5 44024768 44032000 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g2294 - - mtr:MTR_8g019560 1137.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g2294 5 44024768 44032000 Tpr5g2294 5 44024768 44032000 ECH
Tpr7g4802 7 56063656 56072393 Tpr5g2294 5 44024768 44032000 PCT