Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0804 ATGATGTTGTCTAGAATGGAAAGTGGTAAGAAGAGTAGTGGGGTTTCTGGAAATCAAAAGAAATTGTTAAAGGATGTTGAAACTATGAATAAAGCTATGTACATGGATAGAAATGTTTCAAGGAGTTCAGTTTCTGGTTCGGGTTCGAATTCTAGGTCTAAAGTCGCTGGAAAATCGTTATTTCCTGATCCAAAACCGAGGGGTAAAGGAAGTAGTAATAGTAATGATGATAATGATGGTTTGCAGAAGGATAAAAGGTCTATATGGAATTGGAGACCATTGAAGGCACTTTCGCATATTCGAAATAAACGGTTTAATTGTAGTTTTTATCTTCACATACATTTGATTGAAGGGTTGCCTTCTACTTTTAATGGTTCGAGTTTTTCGGTGTATTGGAAGAGGAGGGACGGGGTTTTGGTGACTCGTCCGGTTAAGGTTGTTCAGTGTGTGGCTGAATTTGATGAGAAGTTGACTTATACTTGCTCGGTTTATGGAAGTAGGAGTGGACCTCACCATTCAGCAAAGTATGAAGCGAAGCATTTTTTGCTTTACGCTTCTCTTCTCAGTGCACCGGAGCTTGATTTGGGTAAGCACCGAGTTGATCTCACGAGGTTGCTTCCTCTCACTTTGGAGGAGCTTGAGGAGGAAAAGAGCTCGGGGAAGTGGACTACTAGTTTCAGGTTATCAGATAAGGCTAAGGGTGCCGTGATGAATGTCAGTTTTGGGTATACAGTTGTTGGTGATAACACCAGCACGGTCAGAGATAGCCATAATGCTCCTAATGTATTGACTTCGAGGCAGAATAGTCTTGCTTTGATGAAACCAGATGCTAAACAAAAACAGTTTGATGGAAGCAGCAGCATCAGGCGTGCCGGAAGTTTACAAAACTTTAGTAGTCGGTACTCGTCTCAAGCTGTAGAAGAAGTAAAGGATCTTCATGAGGTGTTGCCATCGTCTAAATCTGCACTAGCCAGCTCAATAGGTGTCTTATATAATAAATTCGATGAAGAAAAGGCATGTAGCTCTCTGGACAATGAACCTGATCCTGATTTGTCAAAAGAAAATCTCGAGCCAATCAAACCAGATGCATGTGCTTTGTCTGATATCGGAAAAGAAACACCCGAAGTCCATGCAGGTAATGATGAAAATACATGTCCTCTGCTCGACACACCTGAACTCGATGCATTTCAAGAAAACCTGGAGACAGATGAACCAGCTGACCATCTTTTACTTGATTCTGGAAAAGAAAACATTGAAGACTGTCAAGATAACAATGATTTTTCCATCGTTGATAAGGGTATTGAAATCTCACCAATTGAACCTGTTAAAGAAGAAGAGTCACTCACAAAGGTTTCTGAAGATGCTTCTACAGTTGATAGTACTTTTATCCTTGATACTGCAGCACAAGGATCATCTGAAGATAGTTTTAAACATGATGATTCTCTTGATGAGTCAAATGATGGTTGTAAGTATCATGCCGTGGTAGACGAATCTGCTTGCGAAGAGGACGACTTTTTGACAAATGAACTGCTGCAAGAATTAGAATCAGCTATAAATAGTGTCTCCGATTTGGAGACAGCGGCTCTAGAATCTCCTAAAGTTGCAGAATTTAAATCTGAATATGAGATGAGAAAGACACATAGTTTAGATGATGTTACAGAATCGGTTGCAAATGAATTTTTAAGCATGCTAGACATAGACCATAGTCTGGAAGGTTTGAATTCTGAAAGCGAGCCTGAGTCTCCAAGAGAGCTTCTTTTAAGACAATTTGAGAAGGAAGCTCTTGATGGGGGCTTCTCTTTATTTGATTTTGATATGGACTGTGACGATGAAGCAGATGATGGCTACAATGCTTCTAATGGATCTGAGCAGTGGAACTTCTCTGAGGCTACTCATTCATCCTTGTTCCAACACCTGCAGAACGAGCATCTAGTTGAGTCTCACAATGTGAAGGGCAAACAAAAGGCTCAAATGCTAGAAGACTTGGAAACAGAAGCCTTAATGCGTCAATGGGGATTGAATGAGAAGGATTTTCACCATTCTCCACCGAAAGATTATACCGGTTTAGGAAGTCCAATTCAATTACCACCTGACGAGCCTCCGACATTGCCTCCTCTTGCCGAGGGGTTAGGCCCTTTTCTTCAGACAAAAGACGGGGGTTATCTACGGTCTATGAATCCTGCAATTTTCAGGAACAGTAAAGCTGGTGGGAGTTTAATCATGCAGGTTTCCAATCCTGTCGTTGTACCCGCAGAAATGGGTTCCGGGATAATGGAAGTTTTACAGTGTTTAGCTTCAGTGGGAATTGAAAAACTCTCAATGCAAGCAAAGGAGTTGATGCCACTTGAAGATATCACTGGGAAGACAATGCAACAAGTAGCATGGGAAGCTATGCCTGGGTTAGAAGGAACAGAGAGGCAATTCCATTTGCAGAATGATTCAGTAACAGGTGAAGATACTTCTTTTGTGCAAAGGGACTTGATAGGAACACCACCATCTGGACGGAAGTCTGGCAATTTTAATTCAAGTTCGCTGGCCAACCAAACAGGTTCGGAGTTTGTTTCAATTGAGGATCTTGCCCCATTGGCTATGAACAAAATTGAAGCACTTTCAATGGAGGGATTGAGAATACAATCTGGGATGTCGGATGAGGAAGCACCGTCTAACATTGTTGCACAATCCATCGGGGAAATGTCAGCTCTCCAAGGCAAGGGCATTGATATTAACGGAACCCTCGGCATGGACGGAGCTGCCGGTTTGCAGTTGATGGATGTAAAAAACAGCAGTGATGATGGTGTTGACGGGATAATGAGCCTATCATTAACTCTTGATGAGTGGATGAAGCTTGATTCAGGTGACATTGATGATGTAGATAATATCAGTGAGCATACTTCCAAAGTTCTTGCAGCCCACCATGCTAACTCTTTCGACTTTATCCGTGGGAGTTCAAAAGGAGGTGATAGGAGACGAGGAAAAGGCTCTAGCAGAAAATGTGGTTTGCTAGGAAACAATTTCACAGTAGCATTAATGGTGCAGCTTCGCGATCCTCTGCGAAATTATGAGCCTGTTGGAACACCAATGCTTGCTCTTATACAAGTTGAGAGAGAGTTCGTCTTACCAAAGCAAAAAATATTCTGTAGTGTGTCCGAGTTACGGAACAACAACAATGACGAGGACAATGAGAGCGAAATAGTAGCAGAGGTGGAGACGAAGGACACTGATAAAGAGGAGATACTTCCTGAAGCAGAACTCATTCCTCAGTTCAAGATTACTGAAGTTCATGTAGCAGGTCTTAAAACTGAGCCTCAGAAAAAGAAGCTTTGGGGCACCTCGACGCAGCAACAATCCGGTTCACGCTGGTTGCTTGCTAATGGAATGGGGAAGAGCAATAAGTTTCCATCAATGAAATCAAAAGCTGCATCTAAGTCTATTGCGCCGGTTACCACAAAGGTGCAGCCTGGTGACACCTTGTGGAGCATTTCTTCGCGTATTTTTGGTTCTGGAAAAAAATGGAAGGATTTGGCAGCGCTAAATCCACAAATAAGAAACCCTAATGTCATTATACCAAATGACACTATTAGACTTAGTTGA 3591 0.4205 MMLSRMESGKKSSGVSGNQKKLLKDVETMNKAMYMDRNVSRSSVSGSGSNSRSKVAGKSLFPDPKPRGKGSSNSNDDNDGLQKDKRSIWNWRPLKALSHIRNKRFNCSFYLHIHLIEGLPSTFNGSSFSVYWKRRDGVLVTRPVKVVQCVAEFDEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSAPELDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSDKAKGAVMNVSFGYTVVGDNTSTVRDSHNAPNVLTSRQNSLALMKPDAKQKQFDGSSSIRRAGSLQNFSSRYSSQAVEEVKDLHEVLPSSKSALASSIGVLYNKFDEEKACSSLDNEPDPDLSKENLEPIKPDACALSDIGKETPEVHAGNDENTCPLLDTPELDAFQENLETDEPADHLLLDSGKENIEDCQDNNDFSIVDKGIEISPIEPVKEEESLTKVSEDASTVDSTFILDTAAQGSSEDSFKHDDSLDESNDGCKYHAVVDESACEEDDFLTNELLQELESAINSVSDLETAALESPKVAEFKSEYEMRKTHSLDDVTESVANEFLSMLDIDHSLEGLNSESEPESPRELLLRQFEKEALDGGFSLFDFDMDCDDEADDGYNASNGSEQWNFSEATHSSLFQHLQNEHLVESHNVKGKQKAQMLEDLETEALMRQWGLNEKDFHHSPPKDYTGLGSPIQLPPDEPPTLPPLAEGLGPFLQTKDGGYLRSMNPAIFRNSKAGGSLIMQVSNPVVVPAEMGSGIMEVLQCLASVGIEKLSMQAKELMPLEDITGKTMQQVAWEAMPGLEGTERQFHLQNDSVTGEDTSFVQRDLIGTPPSGRKSGNFNSSSLANQTGSEFVSIEDLAPLAMNKIEALSMEGLRIQSGMSDEEAPSNIVAQSIGEMSALQGKGIDINGTLGMDGAAGLQLMDVKNSSDDGVDGIMSLSLTLDEWMKLDSGDIDDVDNISEHTSKVLAAHHANSFDFIRGSSKGGDRRRGKGSSRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFVLPKQKIFCSVSELRNNNNDEDNESEIVAEVETKDTDKEEILPEAELIPQFKITEVHVAGLKTEPQKKKLWGTSTQQQSGSRWLLANGMGKSNKFPSMKSKAASKSIAPVTTKVQPGDTLWSISSRIFGSGKKWKDLAALNPQIRNPNVIIPNDTIRLS* 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0804 1196 SMART LysM_2 1148 1196 IPR018392 -
Tpr5g0804 1196 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1195 - -
Tpr5g0804 1196 Pfam LysM domain 1150 1195 IPR018392 -
Tpr5g0804 1196 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1195 IPR039614 -
Tpr5g0804 1196 MobiDBLite consensus disorder prediction 35 56 - -
Tpr5g0804 1196 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 102 247 IPR019448 -
Tpr5g0804 1196 Gene3D LysM domain 1139 1196 IPR036779 -
Tpr5g0804 1196 CDD LysM 1150 1195 IPR018392 -
Tpr5g0804 1196 ProSiteProfiles LysM domain profile. 1147 1195 IPR018392 -
Tpr5g0804 1196 ProSiteProfiles C2 NT-type domain profile. 97 245 IPR019448 -
Tpr5g0804 1196 SUPERFAMILY LysM domain 1147 1195 IPR036779 -
Tpr5g0804 1196 MobiDBLite consensus disorder prediction 1 81 - -
Tpr5g0804 1196 Coils Coil 507 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0804 Tpr-Chr5 14206892 14211560 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0804 - - mtr:MTR_2g040970 1951.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0804 5 14206892 14211560 Tpr5g0804 5 14206892 14211560 ECH
Tpr2g3444 2 37855573 37859689 Tpr5g0804 5 14206892 14211560 PCT