Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0757 ATGGCGAGGCTACTTCGAAGCGCCAACACTTTTCTCCTCAATCGCTCTTTCTTCAACCATGGCCTTCCAACGCGCCAACACTTCAAAAATGGAGTATTGGGCACACCTCAAGTTTTGAGCTTTTCAACTAATAAAGGTAAGAAGCGCGCTAAATCAGATGGAAGTGACTCGGGTGAAGATAACATGTCTAAGAAAGATTTAGCCCTACAACAAGCCATGGATCAGATCACCTCTACATTTGGAAAGGGATCTATCATGTGGCTTGGTCGTACTGTCTCACCCAAAAATGTACCTGTAGTGTCAACTGGTTCTTTTGCTCTTGATATAGCCCTAGGAATCTTTGGTCTTCCAAAGGGGCGCGTTGTGGAAATATTCGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATGTGATTGCAGAGGCACAGAAGCAAGGAGGCTATTGCGCCTTTATTGATGCTGAGCATGCACTTGATAAGTCACTTGCAGAGTCTATCGGTGTAAATACCCAGAACTTGCTTCTTTCACAGCCAGATTGTGGTGAACAGGCACTTAGCCTCGTGGATACCTTAATTCGGAGTGGTTCGATTGATGTAATTGTTGTCGATAGCGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAAGCTAGGTTGATGAGCCAGGCTCTTCGGAAATTGTGCCACTCCTTGTCGCTTTCACAGTGTATATTGATTTTTATAAATCAGGTAAGGTCAAAGATTTCTACTTTTGGTGGATTCGGAGGGCCTACTGAAGTTACTTGTGGTGGCAATGCATTGAAGTTCTATTCTTCTGTGAGGCTAAATATCAAAAGAATAGGTTTTGTCAAGAAGGGTGAAGAGATTTTAGGAAGCCAGGTTCTTGTCAAAGTTGTGAAGAACAAGCACGCCCCTCCATTTAAAACTGCGCAGTTTGAGCTTGAATTTGGAAAGGGCATATGCCGAGAAGCAGAGATTATAGAGTTGAGCATAAAACACAAATTCATAAAAAAGAGCGGTTCGTTTTACGAATACAATTGCAAGAATTTCCACGGCAAGGAAGCACTAAAAAATCACCTGATCAACAGCGACGGCTTACAAGAATTAACAACAAAGCTTAGGGAAAAGCTTCTCAATGCCGAGTCAGAAACAGTTTTGGAACAGCAGGCCATAGATGGAGATATTATGGAAGAAACGTTATCTCATGATGAAGAAGCTGCTATTGTTGCAGAAGCTTGA 1272 0.4324 MARLLRSANTFLLNRSFFNHGLPTRQHFKNGVLGTPQVLSFSTNKGKKRAKSDGSDSGEDNMSKKDLALQQAMDQITSTFGKGSIMWLGRTVSPKNVPVVSTGSFALDIALGIFGLPKGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCAFIDAEHALDKSLAESIGVNTQNLLLSQPDCGEQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRIGFVKKGEEILGSQVLVKVVKNKHAPPFKTAQFELEFGKGICREAEIIELSIKHKFIKKSGSFYEYNCKNFHGKEALKNHLINSDGLQELTTKLREKLLNAESETVLEQQAIDGDIMEETLSHDEEAAIVAEA* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0757 423 PANTHER RECA 1 414 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tpr5g0757 423 CDD recA 64 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tpr5g0757 423 ProSiteProfiles RecA family profile 2. 265 336 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Tpr5g0757 423 SMART AAA_5 118 292 IPR003593 -
Tpr5g0757 423 MobiDBLite consensus disorder prediction 42 62 - -
Tpr5g0757 423 ProSiteProfiles RecA family profile 1. 96 255 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Tpr5g0757 423 TIGRFAM tigrfam_recA: protein RecA 65 385 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tpr5g0757 423 Pfam recA bacterial DNA recombination protein 68 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tpr5g0757 423 MobiDBLite consensus disorder prediction 46 62 - -
Tpr5g0757 423 Gene3D - 95 398 IPR027417 -
Tpr5g0757 423 ProSitePatterns recA signature. 277 285 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Tpr5g0757 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 331 IPR027417 -
Tpr5g0757 423 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 414 - -
Tpr5g0757 423 Hamap Protein RecA [recA]. 65 392 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tpr5g0757 423 PRINTS RecA protein signature 154 183 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tpr5g0757 423 PRINTS RecA protein signature 188 217 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tpr5g0757 423 PRINTS RecA protein signature 226 255 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tpr5g0757 423 PRINTS RecA protein signature 274 302 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tpr5g0757 423 PRINTS RecA protein signature 307 336 IPR013765 GO:0003697|GO:0005524|GO:0006281
Tpr5g0757 423 SUPERFAMILY RecA protein, C-terminal domain 333 386 IPR023400 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0757 Tpr-Chr5 13037578 13044666 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0757 K03553 - gmx:100798983 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3420 2 37673684 37678700 Tpr5g0757 5 13037578 13044666 PCT