Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0708 ATGGCCACCGCTCAAACACCACAAAACGGAACCGCCACCGCAACAAACTCCCTCTTACCAGAAAATCCCTCCGCCACCCAATCACTCACCACCGCCGAAGCCAACACATCTCCAACCGCCAACGAATCGACTCAGGATCCCGATACCCTAACCGAAACCGAAACAGACACCGCCGCCGCCGTTATTACTCCGCCGGAGAAGAGATGGTCTGGTTGGCCTGGAGACTGCGTGTTTCGTTTGATAGTTCCTGTTGCTAAAGTTGGTGGCATCATTGGTCGCAAAGGAGAACTCATCAAGAAGCTTTGTGATGAAACGAAAGCTCGTATTCGTGTTCTTGATGCCGCTCCTGGTACTCCTGATCGAATTATACTTATATCAGGGAAGGAAGAGCTAGAGGCAGCTATTTCACCTGCAATGGATGCTGTATTAAGGATATTCAAACGCGTCTCTGGATTATCCGAAACTGACAGTGAGATTAAAGGATCTGCTGGGCTTACATTTTGTTCCATCCGATTATTGGTGGCATCAACACAGGCTATCAGTTTGATTGGAAAGCAAGGATCACTAATCAGATCCATACAGGAGAGTTCTGGTGCTTCTGTTAGAGTATTGTCTGGAGACGAGATTCAATATTTTGCTACTGCGGATGAGAGGATTGTAGACCTGCAGGGAGAAACCTCGAAGGTCCTTAAAGCTCTTGAAGCCGTGATTGGCCATCTGAGGAAGTTTTTGGTTGATCACAGCATTCTTCCCCTATATGAGAAAACTTACAATGCATCTATCCCACAACAAGATCGTCAACCAGAGACCTGGTCCGACAAGCTGTCGCTGCATACCACTTCACAAACTAGCATGTTTTCTGATATTCCTCTTCCAACAAAAAGGGATTCTATCTTCGCTGACCGTGAAAGTCATTTGGACTTACTCCCTTCCTCCACTATGTCTCTCTATGGTCAAGATTCTTCTCTTTCTGGTGTTCGTTCTTCAACTCTTAGTCGTGTTGGTGCTCCTATTGTTACTACGGTAATCCAAACAATGCAAATACCGCTATCCTATGCAGAGGACATCATTGGCATTCAAGGGACTAATATAGATTATATTCGTCGCACTAGTGGAGCCATATTGACTGTGCAGGAGAGCAGGGTGCCTGATGAAATTGTTGTGGAAATAAAAGGAACCTCATCCCAGGTTCAAACGGCTCAGCAATTGATTCAGGAGGTTATAAGCAATCACAGAGAACCTGTTGCCAACAGCTACGGGAGGTTGGATGCAGGCAGAATAGATGTGGGTCCTAGGTCGTCATATTCTCAATCTTCATACTCTCAGTTGGGCAATACATCGCGCTCTTCATTGTCCTCACAATCATACACAGGTTATGGATCATCTGGTTTAGGAGACTACAGTACTTTCAGGCTTTAA 1419 0.4588 MATAQTPQNGTATATNSLLPENPSATQSLTTAEANTSPTANESTQDPDTLTETETDTAAAVITPPEKRWSGWPGDCVFRLIVPVAKVGGIIGRKGELIKKLCDETKARIRVLDAAPGTPDRIILISGKEELEAAISPAMDAVLRIFKRVSGLSETDSEIKGSAGLTFCSIRLLVASTQAISLIGKQGSLIRSIQESSGASVRVLSGDEIQYFATADERIVDLQGETSKVLKALEAVIGHLRKFLVDHSILPLYEKTYNASIPQQDRQPETWSDKLSLHTTSQTSMFSDIPLPTKRDSIFADRESHLDLLPSSTMSLYGQDSSLSGVRSSTLSRVGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIVVEIKGTSSQVQTAQQLIQEVISNHREPVANSYGRLDAGRIDVGPRSSYSQSSYSQLGNTSRSSLSSQSYTGYGSSGLGDYSTFRL* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0708 472 Gene3D - 75 244 - -
Tpr5g0708 472 ProSiteProfiles Type-1 KH domain profile. 341 404 - -
Tpr5g0708 472 CDD PCBP_like_KH 169 237 - -
Tpr5g0708 472 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 69 142 IPR036612 GO:0003723
Tpr5g0708 472 MobiDBLite consensus disorder prediction 1 65 - -
Tpr5g0708 472 Gene3D K Homology domain, type 1 340 415 IPR036612 GO:0003723
Tpr5g0708 472 ProSiteProfiles Type-1 KH domain profile. 75 142 - -
Tpr5g0708 472 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 64 446 - -
Tpr5g0708 472 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 64 446 - -
Tpr5g0708 472 MobiDBLite consensus disorder prediction 1 58 - -
Tpr5g0708 472 CDD PCBP_like_KH 77 146 - -
Tpr5g0708 472 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 166 248 IPR036612 GO:0003723
Tpr5g0708 472 SMART kh_6 74 147 IPR004087 GO:0003676
Tpr5g0708 472 SMART kh_6 166 241 IPR004087 GO:0003676
Tpr5g0708 472 SMART kh_6 340 409 IPR004087 GO:0003676
Tpr5g0708 472 ProSiteProfiles Type-1 KH domain profile. 167 236 - -
Tpr5g0708 472 Pfam KH domain 344 406 IPR004088 GO:0003723
Tpr5g0708 472 Pfam KH domain 78 135 IPR004088 GO:0003723
Tpr5g0708 472 Pfam KH domain 170 236 IPR004088 GO:0003723
Tpr5g0708 472 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 337 410 IPR036612 GO:0003723
Tpr5g0708 472 CDD KH-I 343 405 - -
Tpr5g0708 472 MobiDBLite consensus disorder prediction 433 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0708 Tpr-Chr5 11828386 11834845 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0708 K21444 - gmx:100815466 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3377 2 37291782 37296519 Tpr5g0708 5 11828386 11834845 PCT