Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g3377 ATGACCACCGTGACGGAGCCAATTCAAAACGGAACTTTACAATCAGAACCACTCACCTCCGAAACAATTTTAGATCCCACCGCCAATCCCTCAACGGAGGAATCAGATTCCGCAGAGAAAAGATGGCCTGGTTGGCCTGGTCACTGCGTTTTCCGGTTAATTGTTCCGGTTCTTAAAGTCGGCATCATCATCGGTCGCAAAGGTGAACTCATAAAAAAGACTTGTGAAGAAACTCGTGCTCGCATTCGTGTTCTTGATGCCCCAGTTGGTACTCCTGATCGAATCGTACTTATATCAGGGAAAGAAGATTTGGAGGCACCTCTTTCTCCTGCAATGGATGCTGTAATAAGGATTTTTAAACGTGTTTCCGGATTAACAGAAACTGATGATAGTAATACAGCATCAGGAGCTGCAGCGGCTGCATTTTGTTCAATACGTTTATTGGTGGCCTCGACGCAAGCTATCAATTTAATAGGAAAGCAGGGTTCGTCGATTAAAACTATACAGGAAAATAGTGGTGCTGCTATTAGAGTTTTGTCTGGAGAGGAGCTTCCATCTTATGCTGGTCCCGATGAGAGGATTGTGGAACTGCAGGGAGAAACCTTGAAGGTCCTTAAGGCTCTGGAAGCTGTAGTCGGGCACCTGAGGAAGTTTTTGGTCGATCAAGGTGTTATTCCCCTATTTGAGAAAACTTGCAATGCAACAATCTCCCAAGACCGCCAGGCGGATGCCTGGGCAGACAAACCATCACTGCACAGTGCTTCACAACCTAGCATTGTTGCTGATATTCCTCTGTCATCAAAAAGGGATTCTTTCTTTGCTGACCGTGAAAGTCAATTGGATTCATTGCTCTCTTCCTCGACAATGTCACTATATGGACAAGATTCTTCAATTTCTGGTCTTCGTTCTTCAGCATTTAATCGTGCCAATGCTTCCATTGTAACTACGGTAATACAAACAATGCAAATACCACTGTCCTACGCAGAGGACATAATTGGTATTCAAGGGACTAACATTGATTACATTCGCCGTACTAGTGGAGCCATATTGACTGTTCAGGAGAGCAGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACTTCATCTCAAGTTCAAACAGCACAACAATTGATTCAGGAAGTTATAACCAATCACAACGAAACCATCGCTAGTAATTATGGCAGGTTAGATGCAGGCCTGAGGTCTTCTTACTCTCAATTGGGCAGTTCATCCTATCCCTCATCATCCTTGCCCTCACAACAACCCTACAATGGGTATGGATCTTCCGGTCTAGGGGACTATAGTACTTTCAGACTTTAA 1323 0.4422 MTTVTEPIQNGTLQSEPLTSETILDPTANPSTEESDSAEKRWPGWPGHCVFRLIVPVLKVGIIIGRKGELIKKTCEETRARIRVLDAPVGTPDRIVLISGKEDLEAPLSPAMDAVIRIFKRVSGLTETDDSNTASGAAAAAFCSIRLLVASTQAINLIGKQGSSIKTIQENSGAAIRVLSGEELPSYAGPDERIVELQGETLKVLKALEAVVGHLRKFLVDQGVIPLFEKTCNATISQDRQADAWADKPSLHSASQPSIVADIPLSSKRDSFFADRESQLDSLLSSSTMSLYGQDSSISGLRSSAFNRANASIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVITNHNETIASNYGRLDAGLRSSYSQLGSSSYPSSSLPSQQPYNGYGSSGLGDYSTFRL* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g3377 440 Gene3D K Homology domain, type 1 48 122 IPR036612 GO:0003723
Tpr2g3377 440 ProSiteProfiles Type-1 KH domain profile. 142 211 - -
Tpr2g3377 440 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 140 225 IPR036612 GO:0003723
Tpr2g3377 440 Pfam KH domain 145 211 IPR004088 GO:0003723
Tpr2g3377 440 Pfam KH domain 51 103 IPR004088 GO:0003723
Tpr2g3377 440 Pfam KH domain 319 381 IPR004088 GO:0003723
Tpr2g3377 440 Gene3D K Homology domain, type 1 143 218 IPR036612 GO:0003723
Tpr2g3377 440 MobiDBLite consensus disorder prediction 1 33 - -
Tpr2g3377 440 Gene3D K Homology domain, type 1 314 390 IPR036612 GO:0003723
Tpr2g3377 440 ProSiteProfiles Type-1 KH domain profile. 48 115 - -
Tpr2g3377 440 MobiDBLite consensus disorder prediction 1 41 - -
Tpr2g3377 440 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 41 102 IPR036612 GO:0003723
Tpr2g3377 440 CDD KH-I 318 380 - -
Tpr2g3377 440 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 36 419 - -
Tpr2g3377 440 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 36 419 - -
Tpr2g3377 440 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 310 385 IPR036612 GO:0003723
Tpr2g3377 440 SMART kh_6 47 120 IPR004087 GO:0003676
Tpr2g3377 440 SMART kh_6 315 384 IPR004087 GO:0003676
Tpr2g3377 440 SMART kh_6 141 216 IPR004087 GO:0003676
Tpr2g3377 440 ProSiteProfiles Type-1 KH domain profile. 316 379 - -
Tpr2g3377 440 CDD PCBP_like_KH 50 119 - -
Tpr2g3377 440 CDD PCBP_like_KH 144 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g3377 Tpr-Chr2 37291782 37296519 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g3377 K21444 - gmx:100802089 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g3377 2 37291782 37296519 Tpr2g3377 2 37291782 37296519 ECH
Tpr2g3377 2 37291782 37296519 Tpr5g0708 5 11828386 11834845 PCT