Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0340 ATGGTTTTAGGCATGAGAGGAAAGAACATGAGAACTAGCAAAGTTCAAATTGATTACCTAATTCATATTCAAGAGATTAAGCCTTGGCCTCCATCACAATCATTACGATCCCTCGGTTTTGTTTTAATGGAAATGAAGAATGGTTCTAGCACATTAGCTTCTACTAAACTAGTATCACCTTCACTTGGTTCAGTTATAGGTGAAGGAAGAATAGAATTCAATGAATCATTTAGAATTTCAGTGACATTGTTGAGGGATGTATCCATTAGAAGCGGCGATTTTGATGTGTTTCAAAAGAATTTCTTGGAATTCAACTTGTTTGAGCCAAGAAAAGATAATAAGATTGTTAAGGGTCAAGTATTAGGAAGTGCTATTGTAGATTTAGCTGATTATGGAATAATTAAAGAAGGATTAAGCATTTGTACATCTTTGAACTGCAAGAGGAGTTATAGAAATAATGATCAACCACTATTGTTTATTAAGATTCAACCTGTTGTAAAGATTCGTGTTCGTTCGACGTTGAAGGAAAGGTTTTCAAATGATGTTTTGGAGGAGAGTAGTAACGGTGGTGGCGATTCGGTATCGGCATTGATGAATGAAGAATATGCTGAGGAAGCTGAGATTGCTTCTTTTACTGATGATGATGTTTCTTCACATTCATCTGTGGCAGCAGCTTCTAATTCATTTGAGTCTAGTGGTTTTACACCTCCTAAATTTGATAAGAATGAACCAAATGGACAAATCCAAAAGACAAATTTGAATGATAAGGAACATCATTTGGCTTCACAAACAAGGCTTGAAAATGAAATCATGAATATGATGCAACAAGATTCATACAAGAAGATGAACAGTTCATCATCAATGGATGCATCTTCTGGTTTTGACTCTTCTTCACCATCTTCAGTTTGTAAAAATTTAGACAAAGATTCTAGAAGCAGAACAAGAAGCAATGATCATGAAAATTTGAATGGAAATTTTCATGACAAGGTTGTTCATTCTAGAAATATAGTTGAAGATGTTCAAAGATTAAGTATCAAAAGTAAGATTAATCCAAAGGTATCAAGAAATAGTAGTTTAGATGGTAAAATTGATTACTTGGAAAACAAGGTAAAGATGCTTGAAGGAGAGTTAAGAGAAACTGCTGCTATTGAAGCTGCTTTATATTCAGTTGTTGCTGAACATGGAAACTCCATGAGTAAGGTTCACGCTCCGGCTCGACGCCTTTCGAGGCTTTATCTTCATGCTTGTAGAGAAAATGTTCAAGGAAGAAAGTATGGTGCAGCTAAAAGTTCTATTTCAGGATTAGTACTTGTTTCAAAGGCTTGTGGAAATGATGTTCCAAGGTTAACCTTTTGGTTGTCTAATACTATAGTGTTGAGAACAATCATAAGCCGAAACTCGAAAGATTTGGTTTCACCAAATCATGGCGGTTCCAATAGGAGAAGAAAATCTGAGGCAGATGGAAATGGCAAGATATCATCCTCACAAAAGTGGAAAGGAGGAAAGACTGAAAATACAACAATAGGGTATGACTGTTTTGGTAACTGGGATGATCCACATGTATTCATTTCAGCGTTGGAAAATGTTGAAGCTTGGATCTTCTCTCGCATAGTAGAATCTATATGGTGGCAGACTCTAACTCCACATATGCAACATGTTGATACAAACTTGACCAACAAGGAAGTAGATTCTGCCTCAAGGAAAAGCTACAAAAGGACTTCTAGTTCATATGATCAATATAAGGGTAACTTGTCACTAGATATTTGGAAGAATGCTTTTAGGGAAGCATGTCAAAGACTATGTCCTATTAGAGCTGGAGGGCATGAGTGTGGATGTTTGCCTGTTCTTCCTAGATTGATAATGGAGCAATGTGTGGCAAGATTAGATGTGGCTATGTTCAATGCAATTTTGAGGGAGTCTGATGACGAAATACCAACTGATCCTATATCTGATGCTATTAGTGATCCTAAGGTTCTCCCTATTCCACCTGGAAATTCAACCTTTGGAGCTGGTGCTCAGCTGAAAACTGTGATTGGGAATTGGTCTAGATGGTTGAGTGATCTATTTGACATGAATGAAGAGGACTCACATGAAGATAAACATAGCTCTAGTAACAATGAGAAGAAAAATGACACATCTTTTAAGTCCTTCACTCTTCTTCATGCACTAAGTGATCTCTTGATGCTTCCTAAAGATATGATATTATGTGCATCCATTAGGAATGAGGTATGCCCCATGTTTAGTGCACCACTTATCAAGAAGATTCTTGATAACTTTTTACCAGATGAGTTTTGCCCTGATCCAGTTCCTACAACTGTTCTTGAAGCTTTGGACTTAGAGAATGATATAGAAGATGGAAAAGAGTTTGGTAACAACTTCCCATGCACTGCAGCTCCAATTGTCTACTCACCACCGCCAGTAACTTCCGTCGCAAGCATTATCGGAGAGATTGGAAGCAAATCTCAGCTAAGAAGAAACAAATCCTCTATTGTTAGGAAGTCATACACAAGTGATGATGAGCTCAATGAATTGAAAGCACCATTATCTTCAATATTCTTTGGAGATTCCTTATCCTCGTCGGTAACAAAATCGAATTCAAAGTCGAGAGAAATTCGCAGTGAATCTCCTGTTAGATATGATCTTCTTAGGGATGTGTGGATGAATAGCAATTAG 2673 0.37 MVLGMRGKNMRTSKVQIDYLIHIQEIKPWPPSQSLRSLGFVLMEMKNGSSTLASTKLVSPSLGSVIGEGRIEFNESFRISVTLLRDVSIRSGDFDVFQKNFLEFNLFEPRKDNKIVKGQVLGSAIVDLADYGIIKEGLSICTSLNCKRSYRNNDQPLLFIKIQPVVKIRVRSTLKERFSNDVLEESSNGGGDSVSALMNEEYAEEAEIASFTDDDVSSHSSVAAASNSFESSGFTPPKFDKNEPNGQIQKTNLNDKEHHLASQTRLENEIMNMMQQDSYKKMNSSSSMDASSGFDSSSPSSVCKNLDKDSRSRTRSNDHENLNGNFHDKVVHSRNIVEDVQRLSIKSKINPKVSRNSSLDGKIDYLENKVKMLEGELRETAAIEAALYSVVAEHGNSMSKVHAPARRLSRLYLHACRENVQGRKYGAAKSSISGLVLVSKACGNDVPRLTFWLSNTIVLRTIISRNSKDLVSPNHGGSNRRRKSEADGNGKISSSQKWKGGKTENTTIGYDCFGNWDDPHVFISALENVEAWIFSRIVESIWWQTLTPHMQHVDTNLTNKEVDSASRKSYKRTSSSYDQYKGNLSLDIWKNAFREACQRLCPIRAGGHECGCLPVLPRLIMEQCVARLDVAMFNAILRESDDEIPTDPISDAISDPKVLPIPPGNSTFGAGAQLKTVIGNWSRWLSDLFDMNEEDSHEDKHSSSNNEKKNDTSFKSFTLLHALSDLLMLPKDMILCASIRNEVCPMFSAPLIKKILDNFLPDEFCPDPVPTTVLEALDLENDIEDGKEFGNNFPCTAAPIVYSPPPVTSVASIIGEIGSKSQLRRNKSSIVRKSYTSDDELNELKAPLSSIFFGDSLSSSVTKSNSKSREIRSESPVRYDLLRDVWMNSN* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0340 890 ProSiteProfiles C2 NT-type domain profile. 7 166 IPR019448 -
Tpr5g0340 890 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 1 889 IPR021827 GO:0005643
Tpr5g0340 890 MobiDBLite consensus disorder prediction 278 305 - -
Tpr5g0340 890 MobiDBLite consensus disorder prediction 470 500 - -
Tpr5g0340 890 PANTHER EEIG1/EHBP1 PROTEIN AMINO-TERMINAL DOMAIN PROTEIN 1 889 - -
Tpr5g0340 890 MobiDBLite consensus disorder prediction 278 322 - -
Tpr5g0340 890 MobiDBLite consensus disorder prediction 306 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0340 Tpr-Chr5 5141592 5148141 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0340 - - ath:AT3G01810 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0340 5 5141592 5148141 Tpr5g0340 5 5141592 5148141 ECH
Tpr6g2741 6 29958875 29964955 Tpr5g0340 5 5141592 5148141 PCT