Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0308 ATGGGGATCCCTGGATTGAGCAATCAGAATAATGGACAGAAATGGTTAGGCATAACTGAGCCGATTTCATTGGCTGGACCAACTGAGGAAGATGTGATCAAGAGCCATGAACTTGAAAAGTACTTGCAAGGTGTTGGATTGTATGAGAGTCAGCAGGAGGCAGTGGGTAGGGAGGAAGTGCTTGGCAGGCTAGACCAGATTGTGAAGATTTGGGTTAAGACCATCAGCCGGGCGAAGGGATTCAATGAACAACTGGTGCATGAAGCAAATGCCAAGATTTTCACTTTTGGCTCCTATCGACTTGGGGTGCATGGACCTGGAGCTGATATTGATACCCTTTGTGTGGGACCTAGACATGCAACTAGAGAAGAAGATTTCTTTGGTGAGCTACAGAAGATGCTATCTGAGATGGAGGAAGTAACTGAATTGCACCCTGTGCCTGATGCTCATGTTCCTGTGATGAAATTCAAGTTCAATGGAGTTTCTGTAGATCTTCTGTATGCAAGATTGGCACTGTGGGTTATTCCTGAAGACTTAGATGTATCACAGGAATCAATATTACAAAATGTAGACGAACAAACTGTTCTCAGTCTCAATGGATGTAGAGTAACTGATCAAGTTCTGCGTTTAGTTCCAAATATTCAGAATTTTCGCACAACATTGAGATGCATGAGGTTTTGGGCAAAGCGTCGTGGTGTATATTCAAATGTTGCTGGTTTTCTTGGTGGTATTAACCTGGCATTGCTTGTTGGTCGAATATGCCAGCTTTATCCTAACGCACTTCCTAATATGTTGGTGTCTAGATTCTTTAGGGTATATACTCAGTGGCGATGGCCGAATCCAGTCATGCTTTGTGCCATCGAAGAAGGATCTCTTGGACTATCCGTTTGGGACCCTAGAAGGAATCCTAAAGATAAATATCATCTAATGCCTATAATTACTCCTGCTTATCCTTGCATGAACTCTACTTACAATGTGACAACAAGTACACTGCTTATTATGTCGGAGGAATTTAAGAGGGGAACTGAAATATGTGAGGCTATGGAGGCTAGCAAGGCTGACTGGGATACTCTTTTTGAACCTTATCCCTTTTTTGAAGCTTACAAGAATTACCTACAAATAGACATTACAGCAGAGAATCCGGACGACCTTAGACAATGGAAAGGATGGGTTGAGTCTCGTCTCCGCCAGTTGACATTGAAGATTGAGAGGTACACTTATGGCATGCTTCAGTGTCATCCACATCCTGGCGAATTTTCAGACAAATCTAGATCCTTCCACCAATGTTACTTTATGGGTCTGCAGCGTAAACAAGGAGTTCCGGTAAATGAAGGTGAACAGTTTGATATAAGGCTAACTGTGGAAGATTGGAAGAATTCTGTCAACGCATACACTTCATGGAAACCTGGAATGGAAATCCACGTTTCCCATGTGAAACGCCGTAACATACCAAATTTCATATTTCCTGGTGGCATTCGACCTAAAGCAACTGGTGAGAATAAACAAAGTTCAAAATTAAGGGTTTCTGGTCAAAGTCAACCTGAAAAGTCTCAAGGCGGTAAAGCAGCTGTACTTGGAGCAGATGACACAAGGAAGAGAAAGCGATTGGAGGATAATAATAACTCGCGGATTTCAAAGTCCTCTTTATCTCCTCCCAATAGGGAAGTTCATGAAGATAGAACTCTTATTAGTGCTACTAGTTCATGTTCAATGAAATTCGATGACTCTGAAGTCAATAGTATGGGTGATCAAAAGAGTTTGAAACCTTGTCTGAAATCGGCTGGTGAGATTCCTTCTGGTGATAGTGTACCCAATGGATCAGCGATGCATAACAAACAATCTGTTGCTCCTGATACATCTAACACCAAAGAAGACGAACGACTAGCCATCGAGCAGATTATGTCTGGTCCGTATGAAGCGCATCAAGCTTTGGCACAAGAACCGGATGAGCTTGAAGAAGATTTGGGGTATAGAAATCAAGTCAACGATAATGGTGGGAGCGTGAAAAGCAACAATTTTGACTCTCCAAACTCAAAGTTTACAGTAGCGGAAGAGCAAGTTATTTCTAAGGAAACCATATGTTCAACTCATTCGTTTTCTAATGGAGGCTTGGAAGAGCTCGAGCCTGCGGAGCTGACAGCACCATTGTTATGTCGGATTCCTGCTCCTGTACCACAGAGGAAACCTCTTATCAGGTTGAACTTCACATCCTTAGGGAAAGCAGTGGATAAAAGTTCTTAG 2241 0.4253 MGIPGLSNQNNGQKWLGITEPISLAGPTEEDVIKSHELEKYLQGVGLYESQQEAVGREEVLGRLDQIVKIWVKTISRAKGFNEQLVHEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREEDFFGELQKMLSEMEEVTELHPVPDAHVPVMKFKFNGVSVDLLYARLALWVIPEDLDVSQESILQNVDEQTVLSLNGCRVTDQVLRLVPNIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINLALLVGRICQLYPNALPNMLVSRFFRVYTQWRWPNPVMLCAIEEGSLGLSVWDPRRNPKDKYHLMPIITPAYPCMNSTYNVTTSTLLIMSEEFKRGTEICEAMEASKADWDTLFEPYPFFEAYKNYLQIDITAENPDDLRQWKGWVESRLRQLTLKIERYTYGMLQCHPHPGEFSDKSRSFHQCYFMGLQRKQGVPVNEGEQFDIRLTVEDWKNSVNAYTSWKPGMEIHVSHVKRRNIPNFIFPGGIRPKATGENKQSSKLRVSGQSQPEKSQGGKAAVLGADDTRKRKRLEDNNNSRISKSSLSPPNREVHEDRTLISATSSCSMKFDDSEVNSMGDQKSLKPCLKSAGEIPSGDSVPNGSAMHNKQSVAPDTSNTKEDERLAIEQIMSGPYEAHQALAQEPDELEEDLGYRNQVNDNGGSVKSNNFDSPNSKFTVAEEQVISKETICSTHSFSNGGLEELEPAELTAPLLCRIPAPVPQRKPLIRLNFTSLGKAVDKSS* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0308 746 SUPERFAMILY Nucleotidyltransferase 17 210 IPR043519 -
Tpr5g0308 746 Gene3D Poly(A) polymerase predicted RNA binding domain 363 478 - -
Tpr5g0308 746 PANTHER POLY A POLYMERASE 1 703 - -
Tpr5g0308 746 MobiDBLite consensus disorder prediction 597 624 - -
Tpr5g0308 746 Pfam Poly(A) polymerase predicted RNA binding domain 364 423 IPR007010 GO:0003723|GO:0043631
Tpr5g0308 746 MobiDBLite consensus disorder prediction 604 618 - -
Tpr5g0308 746 MobiDBLite consensus disorder prediction 489 559 - -
Tpr5g0308 746 MobiDBLite consensus disorder prediction 497 518 - -
Tpr5g0308 746 CDD NT_PAP_TUTase 57 211 - -
Tpr5g0308 746 SUPERFAMILY PAP/OAS1 substrate-binding domain 212 361 - -
Tpr5g0308 746 Gene3D - 17 359 - -
Tpr5g0308 746 Pfam Nucleotidyltransferase domain 77 170 IPR002934 GO:0016779
Tpr5g0308 746 MobiDBLite consensus disorder prediction 526 541 - -
Tpr5g0308 746 Pfam Poly(A) polymerase central domain 17 361 IPR007012 GO:0004652|GO:0043631
Tpr5g0308 746 Gene3D Beta Polymerase, domain 2 49 205 IPR043519 -
Tpr5g0308 746 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Tpr5g0308 746 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0308 Tpr-Chr5 4694050 4700889 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0308 K14376 - gmx:100816915 1266.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0263 3 3043589 3049281 Tpr5g0308 5 4694050 4700889 ECH
Tpr5g0308 5 4694050 4700889 Tpr5g0308 5 4694050 4700889 ECH