Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0263 ATGGGGAGCCCTGGATTGAGCAACCGAAGTAGCGGGCAGCAACGGTGGTTAGGGATAACAGAACCCATATCATTGAGCGGACCGACTGAATATGATGTCGCCAAGACCCGTGAACTCGAGAAGTACTTGCAAGACGCCGGCCTGTATGAAAATCAGGAGGAAGCGATTTGTAGGGAGGAAGTGCTAGGCAGGCTTGACCAGATTGTGAAGATTTGGGTCAAAACCATTAGCCGTGCAAAGGGATTTAACGAACAAATGGTGCAAGAAGCAAATGCCAAGATTTTTACTTTTGGCTCCTATCGCCTAGGGGTACATGGCCCTGGAGCAGATATTGACGTTCTTTGTGTGGGACCTAGACATGCAACCAGAGATGAAGATTTCTTTGGTGAGCTACATAAAATGCTATCTGAGATGCCAGAAGTGACAGAGTTGCACCCAGTGCCTGATGCTCATGTTCCAGTGATGGGTTTCAAGTTCAATGGCGTCTCTATGGATCTCCTTTATGCAAAATTATCTTTGTGGGTTATTCCTGAAGACTTGGATTTATCACAGGAAGCAATATTACAAAATACAGACGAGCAAACTGTTCGCAGTCTTAATGGTTGTAGAGTGACTGATCAAATCTTGCGTTTGGTTCCAAATATTCAGAATTTTCGCACGACATTGAGATGCATGAAGTTATGGGCTAAGCGTCGTGGCGTTTATTCAAATGTTGCAGGTTTTCTTGGTGGTATAAACTGGGCATTGCTGGTTGCTCGAATATGCCAGCTATATCCGAATGCACTGCCTAGTATGTTGGTGTCACGATTCTTTAGGGTATATACTCAGTGGCATTGGCCAAACCCAGTAATGCTTTGTGCTATTGAAGAAGGATCGCTTGGACTTCAAGTTTGGAATCCTAGAAGAAATCCCAAGGATAAATATCATATAATGCCGATAATTACTCCTGCTTATCCTTGCATGAATTCTAGCTACAATGTGTCGTCAAGTACATTGCGTATTATGACAGAGGAGTTTCAGAGGGGACATGAAATATGTGAGGCCATGGAGGCTAACACCGCTGATTGGGATACTCTTTTTGAGCCCTATCCATTTTTTGAAGCTCATAAGAATTATTTGTGGATAGACATTTCCGCAGAGAATGCTGATGATCTTAGAAACTGGAAAGGCTGGGTTAAGTCTCGCATGCGGCAGTTGACATTGAAGATTGAGAGGGACACTTTTGGCATGCTTCAGTGTCATCCACATCCTGATGATTTTTCAGATAAATCTAAACATCTACACTGTTCTTACTTCATGGGTCTGCAACGTAAGCAAGGAGTTCCTACCACTGAAGGCGAACAATTTGATTTAAGACTAGCTGTTGATGAATTTAAGCATACTGTTGGTATGTACAATCAATGGAAACCTGGAATGGATATCTCTGTGTCCCATGTGAAACGCCGCAATATACCTGCCTTTGTATTTCCTAGTGGCGTTCGGCCTAACCGTCCGTCCAAAGTAACCTGGGAGAGTAAGCGAAGTTCAGAGCTTAGGATTTCCGGCCATGGTCAAGCAGAAAAGTCTCAACAAGGTAAAGTGGCTGCATTAGGAGCAAATGATGATAGGAAGAGAAAACAAGCAGAGGATAGTACGGATGACTTAAGAAATTCCAAGGTCTTTTCATCTTTGCCACCCTCCAGCAGGGAAGTTCTTGAAGATGGAAATCCTGTCAGCATTGCTAGTTCTTGCTCTGTGAAATGTGATGACACAGAAGTCAACAGTATGAGTGAACAAAAGAGTGAGAAACCTGATTTGAATTATTCTGGGGAGTATCCTTCTGTGGATAGAGAGACCAATGGATCAGAAAAAAGCAACTCACATATTAACCCTCTACTTACTGCTACTGATACATCTAGTTTTAACGAAGCAGGAAAGCTAGACATTGAGAAGATTACGTGTGGTCCATACGATGCACATCAAGTCTTGTCAGGAGAACCTGATGAGCTTGAAGATGATCTTCAGTATAGAAATCAAATAAAAGATTTTGGCGGGAACCTGAAAAACGGCAACTTGGACTCTACAAACTCAGAGTCTGTAGTGGCAGCGGAACCAGTTTTTTTTCAAGAGGAAAATATTAGTTCAACTCATATATACTCTAACGGGGGCTTGGAGGAACTTGAGCCTACTGAACTCACAGCGCCATTGTTAAGTGGGAATCCTGCACCAGTACCACAGCGGAAACCCCTTATTAGGTTGAACTTCACCTCCTTGGGGAAAGCGGCTGACAGAAGTTCTTAG 2280 0.4329 MGSPGLSNRSSGQQRWLGITEPISLSGPTEYDVAKTRELEKYLQDAGLYENQEEAICREEVLGRLDQIVKIWVKTISRAKGFNEQMVQEANAKIFTFGSYRLGVHGPGADIDVLCVGPRHATRDEDFFGELHKMLSEMPEVTELHPVPDAHVPVMGFKFNGVSMDLLYAKLSLWVIPEDLDLSQEAILQNTDEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMKLWAKRRGVYSNVAGFLGGINWALLVARICQLYPNALPSMLVSRFFRVYTQWHWPNPVMLCAIEEGSLGLQVWNPRRNPKDKYHIMPIITPAYPCMNSSYNVSSSTLRIMTEEFQRGHEICEAMEANTADWDTLFEPYPFFEAHKNYLWIDISAENADDLRNWKGWVKSRMRQLTLKIERDTFGMLQCHPHPDDFSDKSKHLHCSYFMGLQRKQGVPTTEGEQFDLRLAVDEFKHTVGMYNQWKPGMDISVSHVKRRNIPAFVFPSGVRPNRPSKVTWESKRSSELRISGHGQAEKSQQGKVAALGANDDRKRKQAEDSTDDLRNSKVFSSLPPSSREVLEDGNPVSIASSCSVKCDDTEVNSMSEQKSEKPDLNYSGEYPSVDRETNGSEKSNSHINPLLTATDTSSFNEAGKLDIEKITCGPYDAHQVLSGEPDELEDDLQYRNQIKDFGGNLKNGNLDSTNSESVVAAEPVFFQEENISSTHIYSNGGLEELEPTELTAPLLSGNPAPVPQRKPLIRLNFTSLGKAADRSS* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0263 759 SUPERFAMILY PAP/OAS1 substrate-binding domain 213 362 - -
Tpr3g0263 759 Gene3D Poly(A) polymerase predicted RNA binding domain 364 479 - -
Tpr3g0263 759 Pfam Poly(A) polymerase central domain 18 362 IPR007012 GO:0004652|GO:0043631
Tpr3g0263 759 MobiDBLite consensus disorder prediction 584 603 - -
Tpr3g0263 759 Pfam Poly(A) polymerase predicted RNA binding domain 365 423 IPR007010 GO:0003723|GO:0043631
Tpr3g0263 759 Pfam Poly(A) polymerase predicted RNA binding domain 422 493 IPR007010 GO:0003723|GO:0043631
Tpr3g0263 759 SUPERFAMILY Nucleotidyltransferase 14 210 IPR043519 -
Tpr3g0263 759 Pfam Nucleotidyltransferase domain 79 159 IPR002934 GO:0016779
Tpr3g0263 759 PANTHER POLY A POLYMERASE 1 721 - -
Tpr3g0263 759 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 721 - -
Tpr3g0263 759 MobiDBLite consensus disorder prediction 531 549 - -
Tpr3g0263 759 CDD NT_PAP_TUTase 58 212 - -
Tpr3g0263 759 MobiDBLite consensus disorder prediction 499 569 - -
Tpr3g0263 759 MobiDBLite consensus disorder prediction 500 514 - -
Tpr3g0263 759 Gene3D - 18 360 - -
Tpr3g0263 759 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 363 489 IPR011068 GO:0003723|GO:0016779|GO:0031123
Tpr3g0263 759 Gene3D Beta Polymerase, domain 2 50 206 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0263 Tpr-Chr3 3043589 3049281 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0263 K14376 - gmx:100816915 1154.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0263 3 3043589 3049281 Tpr5g0308 5 4694050 4700889 ECH
Tpr3g0263 3 3043589 3049281 Tpr3g0263 3 3043589 3049281 ECH