Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr5g0246 ATGAGTAGAAAGAAAAGGGTATTTTCAATTGATAGTATTGAAGAGGCTGCTGTTGATTTCTTCAACTATCTTATGCAAGAGAAGCCAAAGATTCCATTTTTCATTCCATTTATTTTGATTGCTTGTGCTATTGAGAAATGGGTCTTCTCTTTCTCCACTTGGGTCCCTCTTGCACTTGCTGTTTGGGCCACTATACAGTACGGGAGATACCAACGCAAACTACTTGTGGAGGACTTGGATAAGAAATGGAAGCGAATCATATTGAATAACTCGCCCATCACACCATTGGAGCACTGCGAATGGCTGAATAAATTGTTGACAGAAATCTGGCCCAACTATTTTAACCCTAAGCTTTCATCAAGGTTATCAGCTATAGTTGAGTCACGTTTAAAGCTCCGGAAACCGAGTTTTCTTGAAAGAGTTGAGCTGCAGGAGTTTTCACTCGGATCATGCCCTCCTAGCTTGGCGTTGCAAGGGATGCGATGGTCAACTATCGGTGATCAGCGAGTCATGCAACTTGGTTTTGATTGGGACACCAATGAAATGAGCATTTTAATACTTGCTAAGCTTTCGAAGCCTTTGATGGGAACTGCACGAATCGTTATTAACAGTCTTCATATCAAGGGAGATCTTATCTTTACGCCAATTCTTGATGGAAGAGCACTTTTATACTCGTTTGTATCAGCTCCTGAGGTGAGAGTAGGAGTTGCCTTTGGAAGCGGCGGGAGTCAGTCACTTCCAGCTACTGAGTGGCCTGGTGTTTCTTCTTGGCTTGAAAAGCTTTTTACCGACACCTTGGTTAAAACCATGGTGGAACCTCGACGACGATGTTTTACTTTGCCTGCTGTTGATTTAAGAAAAAAGGCGGTTGGAGGCATCATATATGTTAAAGTGATTTCAGCAAATAAACTTTCTAGGAATTCCTTCAAGGTTTCTAGGAGGCAACAAAATGGATCATCCAATGGATCTTCTGAAGAGAAAGACCTACATACATTTGTAGAGGTAGAAATTGAGGAATTAACGAGGAGAACGGACGTCAGACTAGGTTCAACCCCTAGATGGGATGCACCGTTTAATATGGTTTTGCATGATAATACAGGAAATCTTCGTTTCAATCTTTACGAGTGTATTCCCAACAATGTGAAGTGTGACTATCTAGGAAGTTGTGAAATCAAGTTGAGGCATGTTGAAGATGATTCAACAATAATGTGGGCTGTAGGACCAGATTCCGGGGTTATAGCGAAGCAAGCACAATTTTGTGGAGATGAAATCGAAATGGTTGTCCCATTTGAGGGTGCCAACACCGGAGAGTTGAAGGTGAGCATTGTAGTAAAAGAGTGGCAATTTTCTGATGGAACACATAGCTTGAAGAATCTCCGAAACAACTCTCAGCCGTCACTTAACGGATCATCAAATATTCAGTTAAGAACCGGAAAGAAACTTAACATAACTGTTGTAGAAGGAAAGGATCTTGCTACTGCAAAAGAAAAATCTGGAAAATTTGACCCTTACATCAAATTGCAATATGGAAAGGTTATCCAGAAAACAAAGACTTCTCATACTCCAAATCCTGTTTGGAATCAGGCTTTTGAATTCGACGAGGTTGGTGGTGGTGAATACTTAAAACTAAAAGTATTTACTGAGGAACTTTTTGGAGACGAAAACATTGGTAGTGCACAAGTAAATTTGGAAGGATTGGTTGATGGCTCAGTCAGGGATGTTTGGATCCCTCTTGAAAGAGTGCGATCCGGAGAAATCAGACTTCAAATAGAAGCCGTAAAGGCAGATGACCAAGAAGGATCAATGGGTTCAGGTTCAGGAAATGGTTGGATAGAACTTGTTCTGATTGAAGGGAGGGATCTTGTTGCCGCCGATCTCAGAGGTACAAGTGATCCATATGTGAGGGTACACTATGGAAACTTTAAGAAAAGGACAAAGGTTATATACAAAACTCTAAACCCTCAATGGAACCAGACCCTAGAGTTCCCTGATGATGGAAGTCCCCTAATACTATATGTGAAGGACCATAATGCGTTACTACCAACATCAAGTATAGGAGAATGTGTTGTAGAATATCAAAGGTTGCCCCCAAACCAGATGGCTGATAAGTGGATACCTCTTCAAGGTGTGAAAAGGGGTGAAATTCATATTCAAATTACACGAAAAGTACCAGAGATGCAGAAAAGGCATAGTATAGATTCCGAACCTTCTTTGACTAAATTACACCAAATTCCTAGCCAGATAAAACAGATGATGATCAAGTTCAGGTCACTAATTGAAGATGGAAATCTTGAAGCACTCTCTACAATATTGAGTGAGCTAGAAACTCTTGAAGATACACAAGAAGGATATGTAGCTCAGCTTGAGACCGAGCAAATGCTTCTTCTCAGCAAAATCAAGGAACTTGGCCAAGAGATTATTAATTCTTCTCCTTCATTAAGCAGAAGATTTTCTGAGAGTACCAACTGA 2469 0.407 MSRKKRVFSIDSIEEAAVDFFNYLMQEKPKIPFFIPFILIACAIEKWVFSFSTWVPLALAVWATIQYGRYQRKLLVEDLDKKWKRIILNNSPITPLEHCEWLNKLLTEIWPNYFNPKLSSRLSAIVESRLKLRKPSFLERVELQEFSLGSCPPSLALQGMRWSTIGDQRVMQLGFDWDTNEMSILILAKLSKPLMGTARIVINSLHIKGDLIFTPILDGRALLYSFVSAPEVRVGVAFGSGGSQSLPATEWPGVSSWLEKLFTDTLVKTMVEPRRRCFTLPAVDLRKKAVGGIIYVKVISANKLSRNSFKVSRRQQNGSSNGSSEEKDLHTFVEVEIEELTRRTDVRLGSTPRWDAPFNMVLHDNTGNLRFNLYECIPNNVKCDYLGSCEIKLRHVEDDSTIMWAVGPDSGVIAKQAQFCGDEIEMVVPFEGANTGELKVSIVVKEWQFSDGTHSLKNLRNNSQPSLNGSSNIQLRTGKKLNITVVEGKDLATAKEKSGKFDPYIKLQYGKVIQKTKTSHTPNPVWNQAFEFDEVGGGEYLKLKVFTEELFGDENIGSAQVNLEGLVDGSVRDVWIPLERVRSGEIRLQIEAVKADDQEGSMGSGSGNGWIELVLIEGRDLVAADLRGTSDPYVRVHYGNFKKRTKVIYKTLNPQWNQTLEFPDDGSPLILYVKDHNALLPTSSIGECVVEYQRLPPNQMADKWIPLQGVKRGEIHIQITRKVPEMQKRHSIDSEPSLTKLHQIPSQIKQMMIKFRSLIEDGNLEALSTILSELETLEDTQEGYVAQLETEQMLLLSKIKELGQEIINSSPSLSRRFSESTN* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr5g0246 822 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 292 402 IPR035892 -
Tpr5g0246 822 Gene3D C2 domain 470 594 IPR035892 -
Tpr5g0246 822 Gene3D C2 domain 595 722 IPR035892 -
Tpr5g0246 822 Coils Coil 785 805 - -
Tpr5g0246 822 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 95 281 IPR031468 GO:0008289
Tpr5g0246 822 PANTHER PLANT SYNAPTOTAGMIN 1 814 - -
Tpr5g0246 822 Pfam C2 domain 480 578 IPR000008 -
Tpr5g0246 822 Pfam C2 domain 293 399 IPR000008 -
Tpr5g0246 822 Pfam C2 domain 611 707 IPR000008 -
Tpr5g0246 822 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 602 720 IPR035892 -
Tpr5g0246 822 ProSiteProfiles C2 domain profile. 461 576 IPR000008 -
Tpr5g0246 822 SMART C2_3c 610 704 IPR000008 -
Tpr5g0246 822 SMART C2_3c 293 405 IPR000008 -
Tpr5g0246 822 SMART C2_3c 480 575 IPR000008 -
Tpr5g0246 822 CDD C2 611 707 - -
Tpr5g0246 822 ProSiteProfiles C2 domain profile. 582 705 IPR000008 -
Tpr5g0246 822 PANTHER OS01G0128800 PROTEIN 1 814 - -
Tpr5g0246 822 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 480 591 IPR035892 -
Tpr5g0246 822 Gene3D C2 domain 289 451 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr5g0246 Tpr-Chr5 3568181 3576477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr5g0246 481 746 Lipid Metabolism Gene Families AT3G61300 24.281 5.43e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr5g0246 - - gmx:100807475 1412.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr5g0246 5 3568181 3576477 Tpr5g0246 5 3568181 3576477 ECH
Tpr3g0357 3 3858277 3864532 Tpr5g0246 5 3568181 3576477 PCT