Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0357 ATGAGTAGTAGTAATAAAATGTTGATTACCATTAGTAATTTGGAAGAAGCTGTAGTGAAGAACATGTTAAACCAATTTGTGAAGGTGAAGAAGAAATCAAGGATTTCATACTTGCTTATTCTCGTTTTTATTGCTTGGTTTATTCACAAATGGATCTTCTCTTTCTCCAATTTCCTTCCAATTGCACTCCTTCTCTTTGCATCTACTCAATATGGGAATTACCAGCGGAAACTACTTGAAGAGGACTTGAACAAGAAATGGAATCGTATCATAGTCAATACCTCGCCTGTCACACCATTGGAACAATGTGAGTGGTTGAATCTACTGTTGTCACAAATCTGGTCCAACTATTTTAATCCTAAGCTCTCAAAAAGGTTATCAGCCATAGTAGAGAAACGTTTAAAGCTGCGGAAACCAAGATTTATAGAAAGAGTTGAGGTGCAGGAATTTTCACTTGGGTCACGCCCTCCCAGTTTGGGCCTTCAAGGGATGAGATGGTCAACCTCTGGTGAACAGCGAGTCCTGAAAATGGGTTTTGATTGGGACACGAGTGAGATGAGTATTTTGATGGTTGCTAAGCTGGCTGTTGGTACTGCCAGAATTGTGATTAACAGTCTTCATATCAAGGGTGATCTTCTTGTGACACCAATTCTAGATGGAAAAGCACTTCTGTATTCATTTGTATCAACACCTGAGGTTAGAATAGGAATTGCTTTTGGAAGTGGAGGAAGCCAATCATCCACTGAGTTGCCTGGTGTTTCTCCTTGGCTGGTTAAACTTTTTACCGACACTTTGGTAAAAACCTTGGTGGAACCTCGGCGCCGCTGTTTCAGTTTGCCTGCAGTTGATTTAAGGAAACATGCTGTTGGAGGCACAATATATGTTTCAGTGATTTCCGCTAACAAACTTTCTAGTAGTTGGCTCAAGAGGAGGCAACAAAATGGCACAGGCGATGGCTGTTTAGAAGACAACTTGCGTGACAAAGACTTGCATACATTTGTAGAGGTAGAAGCGGAGGAGCTGACAAGGAGAACAACTGTGAGCCTTGGTTCAGCTCCAAGATGGGATACAACATTTAATATGGTTTTACATGATAATACAGGAATAGTTCGCTTCAATCTTTACGAGTGTCCCCCTGACAGTGTGAAGTATGACTACCTTGCATGTTGTGAAATCAAGTTGAGGCATGTTGAGGATGATTCAACAATAATGTGGGCAATAGGGCCTGATTCTGGTGTAATAGCAAAACATGCAAAGATTTGTGGAGAGGAAGTTGAAATGGTTGTCCCTTTTGAGGGGGCCAACTCAGCAGAGTTAAAGGTGAGAATTGTAGTGAAAGAGTGGCAATTCTCTGATGGTTCTCATAGCTCGACCAACCTCCATGCCAGTCCTCCTAAATCACTTAAGGGATCATCAAATCTTCTTTCAAAAACTGGAAGGAAACTTAAGATAACTGTTGTGGAAGCAAAGGATCTAGCCACGAATGACAAATTTGGAAAATTTGACCCTTACATTAAGTTGCAGTATGGAAAGGTTGTCATGAAAACAAATGTTGCTCCTCCTCCTACTCGTCCAACTCCTGTCTGGAATGAGACATTTGAAGTAGATGAGAATAGTGGTGATGAATACCTAAATGTGAAATGCTTTAGTGAGGAAATTTTTGGAGATGAAAACATTGGTAGTGCACATGTAAATTTGGAAGGACTGATAGAAGGGTCAATCAGGGATGTGTGGGTCCCACTTGAAGGAGTGAATTCTGGTGAATTAAAACTTAAAATAGAAGCAATTAGGGTTGACGACAAAGAGGGGTCAAAGGGTCCGGCGTCATGCACGGTTAAGGCTAATGGTTGGATTGAACTTGTTCTTATTGAAGGAAGGGGTCTTATTGCTGCTGATCTTAGAGGGACAAGTGATCCTTATGTGAGGGTAAACTATGGAAACTTGAAGAAAAGAACAAAGGTTGTACACAAAACTCTCAACCCTCGATGGGACCAGACCTTAGAATTCAAAGACGATGGAAGTCCCCTGATACTGCATGTGAAGGACCATAATGCTTTACTACCCACATCAAGTATAGGTGAATGTGTTGTAGAATATCAAACGTTGCCTCCAAACCAAATGTCCGACAAGTGGATACCTCTCCAAGGGGTGAAAAGTGGTGAGATCCACATCCAAATCACAAGAAAAGTTCCAGCGAAGCAAACAAGACAATCTTCAGACTCTGAACTTTCTTTGACTAAATTACATCAGATTCCAAGCCAGATGAAGGAAATGACGAAAAAGATTCAGTATTTAATAGAGGATGAAAATCTGGAAGAACTATCTACAACTTTGAGTGAGTTAGAAACACTAGAGGATACACAAGAAGGGTATATAGTCCAGTTGGAGACTGAGCAAATGCTTCTTATCAGCAAAATAAATGAATTGGGCCAAGAGATCATCAACTCTTCTCCTTCCCTCAAAAGAAGTTGA 2472 0.4078 MSSSNKMLITISNLEEAVVKNMLNQFVKVKKKSRISYLLILVFIAWFIHKWIFSFSNFLPIALLLFASTQYGNYQRKLLEEDLNKKWNRIIVNTSPVTPLEQCEWLNLLLSQIWSNYFNPKLSKRLSAIVEKRLKLRKPRFIERVEVQEFSLGSRPPSLGLQGMRWSTSGEQRVLKMGFDWDTSEMSILMVAKLAVGTARIVINSLHIKGDLLVTPILDGKALLYSFVSTPEVRIGIAFGSGGSQSSTELPGVSPWLVKLFTDTLVKTLVEPRRRCFSLPAVDLRKHAVGGTIYVSVISANKLSSSWLKRRQQNGTGDGCLEDNLRDKDLHTFVEVEAEELTRRTTVSLGSAPRWDTTFNMVLHDNTGIVRFNLYECPPDSVKYDYLACCEIKLRHVEDDSTIMWAIGPDSGVIAKHAKICGEEVEMVVPFEGANSAELKVRIVVKEWQFSDGSHSSTNLHASPPKSLKGSSNLLSKTGRKLKITVVEAKDLATNDKFGKFDPYIKLQYGKVVMKTNVAPPPTRPTPVWNETFEVDENSGDEYLNVKCFSEEIFGDENIGSAHVNLEGLIEGSIRDVWVPLEGVNSGELKLKIEAIRVDDKEGSKGPASCTVKANGWIELVLIEGRGLIAADLRGTSDPYVRVNYGNLKKRTKVVHKTLNPRWDQTLEFKDDGSPLILHVKDHNALLPTSSIGECVVEYQTLPPNQMSDKWIPLQGVKSGEIHIQITRKVPAKQTRQSSDSELSLTKLHQIPSQMKEMTKKIQYLIEDENLEELSTTLSELETLEDTQEGYIVQLETEQMLLISKINELGQEIINSSPSLKRS* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0357 823 ProSiteProfiles C2 domain profile. 463 579 IPR000008 -
Tpr3g0357 823 CDD C2 618 714 - -
Tpr3g0357 823 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 99 280 IPR031468 GO:0008289
Tpr3g0357 823 PANTHER PLANT SYNAPTOTAGMIN 1 822 - -
Tpr3g0357 823 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 615 727 IPR035892 -
Tpr3g0357 823 Pfam C2 domain 481 581 IPR000008 -
Tpr3g0357 823 Pfam C2 domain 292 400 IPR000008 -
Tpr3g0357 823 Pfam C2 domain 618 714 IPR000008 -
Tpr3g0357 823 SMART C2_3c 481 578 IPR000008 -
Tpr3g0357 823 SMART C2_3c 292 406 IPR000008 -
Tpr3g0357 823 SMART C2_3c 617 711 IPR000008 -
Tpr3g0357 823 PANTHER OS01G0128800 PROTEIN 1 822 - -
Tpr3g0357 823 Gene3D C2 domain 605 729 IPR035892 -
Tpr3g0357 823 Gene3D C2 domain 466 598 IPR035892 -
Tpr3g0357 823 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 324 402 IPR035892 -
Tpr3g0357 823 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 480 596 IPR035892 -
Tpr3g0357 823 ProSiteProfiles C2 domain profile. 599 712 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0357 Tpr-Chr3 3858277 3864532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0357 466 753 Lipid Metabolism Gene Families AT3G61300 23.582 4.21e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0357 - - mtr:MTR_8g104330 1313.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0357 3 3858277 3864532 Tpr5g0246 5 3568181 3576477 PCT