Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4777 ATGGCTACAGCAGAGAGTCTTGTGGAATCCACCATGAAGAGGCAAAGAGATGGTGAAGAGAATAATGGGGTTTCTGTTGTTCAAACTGTTTCTGGTGATAATAAGGACCCAAATGGTAATGGTGTTTCATCTGTCATTCCTGGCTGGTTTTCTGAAATTAGCCCAATGTGGCCTGGAGAAGCTCACTCCTTGAAGATAGAAAAGATTTTGTTTCAAGGAACGTCTGATTACCAGAAAGTCATGGTCTTCCAGTCATCAACGTATGGCAAGGTTCTTGTTTTGGACGGTGTTATTCAGCTCACAGAAAGGGACGAATGTGCCTACCAAGAAATGATCACTCATCTTCCTCTTTGCTCTATACCAAACCCTAAAAAGGTTTTGGTTATTGGTGGAGGTGATGGAGGAGTCCTGCGGGAAGTAGCACGTCATTCTTCAATTGAAAAGATAGACATTTGTGAAATTGACAATATGGTTGTTGAAGTCTCGAAACAATTTTTCCCTGAAGTTGCAGTAGGGTTTAATGATCCACGTGTGACACTTCGCATTGGTGATGGAGTTGCATTTTTGAAGGCAGCTCAAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCTGACCCTATTGGTCCTGCTCAAGAGCTTTTTGAAAAGCCCTTCTTTCAGTCAGTGGCTAGGGCTCTTCGTCCCGGAGGAATTATGTGCACTCAAGCAGAAAGTATATGGCTTCATATGGATATAATTGAGGACATTGTGTCCAATTGTCGTCTGATTTTCAAAGGCTCTGTCAACTATGCTTGGACTACAGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCGACCGAGGGACCTCTTGTTGATTTCAAGCATCCAGTGAATCCCATAGATGAAAAAGAGTGTCAGAAGTCAGTAAGACCACTAAAATTTTACAACTCTGAGATTCATACAGCAGCTTTCTGTTTGCCATCTTTTGCGAAAAGGAAGATTGGTTCCAAAGAAAATTGA 1014 0.4181 MATAESLVESTMKRQRDGEENNGVSVVQTVSGDNKDPNGNGVSSVIPGWFSEISPMWPGEAHSLKIEKILFQGTSDYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSIEKIDICEIDNMVVEVSKQFFPEVAVGFNDPRVTLRIGDGVAFLKAAQEGTYDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGIMCTQAESIWLHMDIIEDIVSNCRLIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPLVDFKHPVNPIDEKECQKSVRPLKFYNSEIHTAAFCLPSFAKRKIGSKEN* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4777 337 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 45 332 IPR029063 -
Tpr4g4777 337 Gene3D Vaccinia Virus protein VP39 100 337 IPR029063 -
Tpr4g4777 337 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 47 284 IPR030374 -
Tpr4g4777 337 MobiDBLite consensus disorder prediction 1 23 - -
Tpr4g4777 337 Pfam Spermidine synthase tetramerisation domain 48 102 IPR035246 -
Tpr4g4777 337 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 126 139 IPR030373 -
Tpr4g4777 337 CDD AdoMet_MTases 125 236 - -
Tpr4g4777 337 Pfam Spermine/spermidine synthase domain 105 292 - -
Tpr4g4777 337 TIGRFAM speE: spermidine synthase 49 327 IPR001045 GO:0003824
Tpr4g4777 337 Hamap Polyamine aminopropyltransferase [speE]. 48 333 IPR001045 GO:0003824
Tpr4g4777 337 PANTHER SPERMIDINE SYNTHASE-RELATED 3 337 - -
Tpr4g4777 337 Gene3D Spermidine synthase, tetramerisation domain 41 99 IPR037163 -
Tpr4g4777 337 PANTHER SPERMIDINE/SPERMINE SYNTHASE 3 337 IPR001045 GO:0003824
Tpr4g4777 337 PIRSF Spermidine_synth 38 337 IPR030668 GO:0006595
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4777 Tpr-Chr4 56393928 56399393 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4777 K00797 - gmx:100776863 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4777 4 56393928 56399393 Tpr4g4777 4 56393928 56399393 ECH
Tpr2g1739 2 20549747 20553946 Tpr4g4777 4 56393928 56399393 PCT