Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1739 ATGGCGGCAGCAGAAAACACAGTTGAGGCCACAGATTTTCCCGTTAAGAGGCAAAGAGAAGATGAACAACTCAACAATGGTGTCACTGTTTCTGAAATTGTTCCACAAGAACCTCAACCTAATGGTTTATCAACTGTTATTCCTGGCTGGTTCTCTGAAATTAGCCCAATGTGGCCTGGGGAGGCTCACTCCTTGAAGGTGGAAAAGATTTTATTTCAAGGAAAGTCTGATTATCAGGACGTTATGGTCTTCCAGTCAGCAACATATGGCAAGGTTCTTGTTTTGGATGGTGTCATTCAGCTCACAGAAAGGGATGAGTGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATCCCTAACCCTAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTCTTGCGGGAAGTTTCACGCCATTCTTCAGTAGAAAAGATAGACATTTGTGAAATCGACAAGATGGTTGTTGATGTCTCCAAACAATTTTTCCCTGATATAGCAGTCGGTTTTGAGGACCCTCGTGTGACACTTAATATCGGTGATGGAGTTGCATTTTTGAAGGCAGCTCCAGAAGGAACTTATGATGCAGTTATTGTGGATTCGTCTGATCCTATTGGTCCTGCTCAAGAGCTTTTTGAAAAGCCTTTTTTTGAGTCGGTTGCAAAGGCTCTTCGTCCAGGAGGAGTTGTGTGTACTCAAGCAGAAAGTATATGGCTTCACATGCACATCATTGAGGACATAGTGGCGAATTGTCGCCAGGTATTCAAAGGTTCTGTCGACTATGCTTGGACCACAGTTCCTACATACCCAAGTGGGATGATTGGCTTTATGCTTTGCTCAACTGAGGGACCTTCCGTCGATTTCAAGCATCCAGTGAATCCTATTGATGAGAATGATAGCCAGCAGGCAGGAAGACCATTGAAATTTTACAACTCTGAGATTCATTCAGCAGCTTTCTGTTTGCCATCTTTTGCTAAGAGGGCGATTGCTTCTAAAGCAAACTGA 1017 0.4366 MAAAENTVEATDFPVKRQREDEQLNNGVTVSEIVPQEPQPNGLSTVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKQFFPDIAVGFEDPRVTLNIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFESVAKALRPGGVVCTQAESIWLHMHIIEDIVANCRQVFKGSVDYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDENDSQQAGRPLKFYNSEIHSAAFCLPSFAKRAIASKAN* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1739 338 Pfam Spermidine synthase tetramerisation domain 49 103 IPR035246 -
Tpr2g1739 338 PANTHER SPERMIDINE/SPERMINE SYNTHASE 3 338 IPR001045 GO:0003824
Tpr2g1739 338 PIRSF Spermidine_synth 39 338 IPR030668 GO:0006595
Tpr2g1739 338 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 48 285 IPR030374 -
Tpr2g1739 338 Pfam Spermine/spermidine synthase domain 106 293 - -
Tpr2g1739 338 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 127 140 IPR030373 -
Tpr2g1739 338 TIGRFAM speE: spermidine synthase 50 328 IPR001045 GO:0003824
Tpr2g1739 338 Hamap Polyamine aminopropyltransferase [speE]. 49 334 IPR001045 GO:0003824
Tpr2g1739 338 CDD AdoMet_MTases 126 237 - -
Tpr2g1739 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 46 333 IPR029063 -
Tpr2g1739 338 PANTHER SPERMIDINE SYNTHASE-RELATED 3 338 - -
Tpr2g1739 338 Gene3D Vaccinia Virus protein VP39 101 338 IPR029063 -
Tpr2g1739 338 Gene3D Spermidine synthase, tetramerisation domain 42 100 IPR037163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1739 Tpr-Chr2 20549747 20553946 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1739 K00797 - gmx:100790506 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1739 2 20549747 20553946 Tpr2g1739 2 20549747 20553946 ECH
Tpr2g1739 2 20549747 20553946 Tpr4g4777 4 56393928 56399393 PCT