Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4439 ATGCACACATCTTCAGAATTCTCAGAGGAAATGGCCTTAAACAACAATAAAACCAAGAAACCCATTTCCCCATCAAATTTCTATTTCTTCACAACCCTTTTGTTCATTGTACTCTTTACCATACCAGCTTTTTTCCTTCTTCACACCCCTACCACAACTTCTATTTGCACCACCTTTGCCTCCCACCAATCAAAAACTTGGTCTGGTGATCTTACTTTAGCTGAATTTTCATGGAACAAGCTTTCATTTTTTCCACACAAAAAACCACTTTTACCTCTAAAAATTGCTGTTTTCACAAGAAAATGGCCTATTGGTACAACCCCAGGTGGCATGGAACGCCATGCTTATACCCTTCATACTGCTTTAGCTCAAAGAGGACATAAAGTTCATATTTTTACATCACCCCAAGATGAAAAAACTTCAATTAAAGGTAACCCTTTTATTCATTTTCATGAAGGTGAATTTGGAAAGTGGAGATATAATAAAGCATTGGAACAATTTCAGGAAGAGAACAAGATTGAACCTTTTGATGTTATTCATTCAGAAAGTGTTGCACTTCCTCATTATGTAGCTAGGAATCTTCCAAATCTTGCAGTGTCTTGGCATGGAATAGCACTTGAGAGCTTGCAATCAAGTATTTTTCAGGATTTAGCTAGAAGATCTGATGAACCTATTTCACCTCTTTTCAATAATAGTTTACAGGGTATTGTTCCTAAGGTTCTTAATGAGATAAGATTCTTTCAAAGTTATGCTCATCATGTTGCTATTAGTGATAGTTGTGGCGAAATGTTAAGGGATTTCTACCAAATTCCTACAAGAAGAGTTCATGTGATTGTTAATGGGGTTGATGAGGATGAGTTTGGTGAAGATGTTGAATTAGGAAGGGAATTTAGAACACAAATTGGGATTCCAAGGAATGCAAGTTTAGTACTTGGTGTAGCTGGGAGATTAGTTAAAGACAAAGGTCATCCTTTGCTTTATGAAGCATGCTCTAGGCTAATAACAAAACATCCTAATGTGTATTTGATTATTGCTGGTTCTGGACCATGGGGGAACAGGTACAAAGATTTAGGAAACCAGGTTCTTGTTTTAGGGTCAATGAGTCCTACCATGTTGAGAGCATTTTATAATGCTATTGACATTTTTGTCAATCCAACACTTAGGCCACAAGGGCTTGATCTTACTCTGATGGAGGCTATGATGAGTGGGAAGCCTCTTTTAGCATCAAGGTTTCCAAGCATTAAAGGTACTCTTTTGGTTGATGATGAGTATGGTTTCATGTTCTCTCCTAATGTGGAGTCTTTGCTTGAGGCACTTGAAGCAGTAGTGAAGGAAGGACCAATGAGGCTAGCAAAGAGAGGAAAGGCTTGTAGGGAATATGCTGCATCAATGTTTACAGCAAAAAAGATGGCATTAGCATATGAGAGGTTATTTCTATGTATAAAAGATCCTACATTTTGTATCTACCCTTGA 1473 0.3754 MHTSSEFSEEMALNNNKTKKPISPSNFYFFTTLLFIVLFTIPAFFLLHTPTTTSICTTFASHQSKTWSGDLTLAEFSWNKLSFFPHKKPLLPLKIAVFTRKWPIGTTPGGMERHAYTLHTALAQRGHKVHIFTSPQDEKTSIKGNPFIHFHEGEFGKWRYNKALEQFQEENKIEPFDVIHSESVALPHYVARNLPNLAVSWHGIALESLQSSIFQDLARRSDEPISPLFNNSLQGIVPKVLNEIRFFQSYAHHVAISDSCGEMLRDFYQIPTRRVHVIVNGVDEDEFGEDVELGREFRTQIGIPRNASLVLGVAGRLVKDKGHPLLYEACSRLITKHPNVYLIIAGSGPWGNRYKDLGNQVLVLGSMSPTMLRAFYNAIDIFVNPTLRPQGLDLTLMEAMMSGKPLLASRFPSIKGTLLVDDEYGFMFSPNVESLLEALEAVVKEGPMRLAKRGKACREYAASMFTAKKMALAYERLFLCIKDPTFCIYP* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4439 490 Gene3D Glycogen Phosphorylase B; 292 461 - -
Tpr4g4439 490 PANTHER GLYCOSYLTRANSFERASE 11 490 - -
Tpr4g4439 490 Pfam Glycosyl transferases group 1 310 454 IPR001296 GO:0016757
Tpr4g4439 490 Gene3D Glycogen Phosphorylase B; 93 291 - -
Tpr4g4439 490 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 478 - -
Tpr4g4439 490 CDD GT4_PimA-like 94 478 - -
Tpr4g4439 490 PANTHER GLYCOSYLTRANSFERASE 11 490 - -
Tpr4g4439 490 Pfam Glycosyltransferase Family 4 109 285 IPR028098 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4439 Tpr-Chr4 52078851 52080746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4439 14 490 Glycosyltransferase AT4G19460 62.475 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4439 - - aprc:113860121 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4439 4 52078851 52080746 Tpr4g4439 4 52078851 52080746 ECH
Tpr2g1335 2 15616189 15617817 Tpr4g4439 4 52078851 52080746 PCT