Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4406 ATGGAAATTCGCCGGAGACAATCTTCACCGACGCCGGCTGTTCCTTCCGGCGAACATCTCAAACCTCAGAAGCTTACCACTACCGATTCACAAACCTTTTCTATCTGCGTCGCTAACGCTGTTTTCTTTGGTTTATTCTTCTCCGTCGCGTATTTTCTTCTCCACCGTTGGCGTGAGAAGATCAGAACCTCCACACCTCTTCATGTCGTCACCGCATCAGAAACCGCCGCCATTGTTTCTCTTGTAGCTTCCGCCGTTTATCTTCTAGGTTTCTTCGGTATCGGATCTCGTACTTCCTTCCCTGACGATCTCTCCGACGAAGAGATCCTCGCGAAAGAAGATTCTCGGAAGCCAGGACCGTGTCCGGCGGCACTTGTCGACACCGAAGTGAAACCGGCGTCGGCAATTGTAGCTCCGCCGGCGAAGATCTATGGCGTTGCACCGGTGAATCTCTCAGAGGAAGACGAGGAAATGGTGAAATCGGTTGTTTCCGGTTCAATTCCGTCGTATTCATTAGAATCTAGACTTGCCGATTGCCGGAAAGCCGCGGTGATTCGACGTTCGGCGGTTCAGATGATAACAGGGAAATCGTTGGAAGGTTTACCGTTGGAAGGTTTTGATTACGATTCGATATTGGGACAGTGTTGTGAGATGCCGATAGGGTTTGTTCAGATTCCGGTTGGTGTTGCGGGTCCATTGTTGTTAGATGGAGTTGAGTACACTGTACCAATGGCTACTACTGAGGGTTGTTTGGTTGCAAGTACCAATAGAGGGTGTAAAGCTATTCATGCTTCTGGTGGAGCTTCTTCTGTTTTGCTTAGAGATGGAATGACTAGAGCACCTGTTGTTAGGTTTTCGTCTGCGAAAAGAGCTGCTCAGTTGAAGTTTTTCTTGGAAGATCCGCTTAATTTTGATTCACTTGCTGTCACTTTCAACAAGTCAAGCAGATTCGCTAGATTGCAGAGCATTCAACCTACTATTGCTGGCAAGAATTTGTACATTAGATTCCGTTGCAGTACGGGTGATGCCATGGGGATGAACATGGTATCAAAAGGAGTTCAAAATGTCCTTGATTTTCTTCAGAGTGACTTCCCTGATATGGATGTCATTGGAATCTCTGGAAATTTCTGTTCCGACAAGAAAGCTTCGGCTGTGAACTGGATTGAAGGGCGTGGTAAGTCCGTGGTGTGTGAGGCTGTAATTAAGGAAGAAGTGGTGAAGAAAGTGTTGAAGACTAATGTGGAGGCCCTGGTTGAGCTTAACATGCTTAAGAACCTAACTGGCTCAGCCATTGCTGGTGCTCTTGGTGGGTTCAATGCTCATGCTAGCAATATTGTCTCTGCTATCTACATAGCCACTGGTCAAGATCCTGCTCAGAATGTGGAGAGTTCTCACTGTATTACCATGATGGAAGCTATAAATGATGGAAAAGACCTTCACATTTCTGTCACCATGCCTTCCATTGAGGTTGGTACTGTGGGAGGGGGAACACAACTCGCATCACAGTCAGCTTGTCTAAATTTACTTGGTGTTAAGGGTGCCAGCAAAGATTCACCAGGTGCAAATTCTAGGCTACTGGCCACAATTGTTGCCGGTTCAGTCCTTGCCGGCGAGCTATCACTCATGTCTGCAATTGCAGCCGGACAACTAGTTAAGAGTCACATGAAGTACAACAGATCTAGCAAGGATATCACCAAAGTAGTCTCATGA 1710 0.469 MEIRRRQSSPTPAVPSGEHLKPQKLTTTDSQTFSICVANAVFFGLFFSVAYFLLHRWREKIRTSTPLHVVTASETAAIVSLVASAVYLLGFFGIGSRTSFPDDLSDEEILAKEDSRKPGPCPAALVDTEVKPASAIVAPPAKIYGVAPVNLSEEDEEMVKSVVSGSIPSYSLESRLADCRKAAVIRRSAVQMITGKSLEGLPLEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDGVEYTVPMATTEGCLVASTNRGCKAIHASGGASSVLLRDGMTRAPVVRFSSAKRAAQLKFFLEDPLNFDSLAVTFNKSSRFARLQSIQPTIAGKNLYIRFRCSTGDAMGMNMVSKGVQNVLDFLQSDFPDMDVIGISGNFCSDKKASAVNWIEGRGKSVVCEAVIKEEVVKKVLKTNVEALVELNMLKNLTGSAIAGALGGFNAHASNIVSAIYIATGQDPAQNVESSHCITMMEAINDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKDSPGANSRLLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDITKVVS* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4406 569 Gene3D - 276 392 IPR009023 -
Tpr4g4406 569 Pfam Hydroxymethylglutaryl-coenzyme A reductase 184 559 IPR002202 GO:0004420|GO:0015936
Tpr4g4406 569 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 569 IPR002202 GO:0004420|GO:0015936
Tpr4g4406 569 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 215 236 IPR002202 GO:0004420|GO:0015936
Tpr4g4406 569 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 242 262 IPR002202 GO:0004420|GO:0015936
Tpr4g4406 569 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 333 351 IPR002202 GO:0004420|GO:0015936
Tpr4g4406 569 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 373 398 IPR002202 GO:0004420|GO:0015936
Tpr4g4406 569 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 424 450 IPR002202 GO:0004420|GO:0015936
Tpr4g4406 569 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 478 499 IPR002202 GO:0004420|GO:0015936
Tpr4g4406 569 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 335 349 IPR023076 GO:0004420
Tpr4g4406 569 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 490 497 IPR023076 GO:0004420
Tpr4g4406 569 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 276 392 IPR009023 -
Tpr4g4406 569 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 155 559 IPR004554 GO:0004420|GO:0005515|GO:0008299
Tpr4g4406 569 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 544 557 IPR023076 GO:0004420
Tpr4g4406 569 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 1 569 - -
Tpr4g4406 569 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 150 548 IPR009029 GO:0015936|GO:0016616
Tpr4g4406 569 MobiDBLite consensus disorder prediction 1 22 - -
Tpr4g4406 569 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 155 559 IPR002202 GO:0004420|GO:0015936
Tpr4g4406 569 Gene3D - 226 546 IPR023074 GO:0004420
Tpr4g4406 569 CDD HMG-CoA_reductase_classI 156 559 IPR004554 GO:0004420|GO:0005515|GO:0008299
Tpr4g4406 569 Gene3D - 151 225 IPR023282 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4406 Tpr-Chr4 51449059 51453017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr4g4406 4 565 Lipid Metabolism Gene Families AT1G76490 71.327 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4406 K00021 - gmx:100811237 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1232 2 14436000 14438359 Tpr4g4406 4 51449059 51453017 ECH
Tpr4g4406 4 51449059 51453017 Tpr4g4406 4 51449059 51453017 ECH
Tpr2g1232 2 14436000 14438359 Tpr4g4406 4 51449059 51453017 PCT