Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g1232 ATGGACGTTCACCAAAAAAGTGTATGTTCTGATCTCTCTGGTAAATCTTCAAAAGCAAAGAACCAAAAGCAGGATTCACAGTCACAACCATCACTGTACTTAACAAACGCAGTTTTCTTCGGTCTCTTCTTCTCTGTTGTGTACTTTCTTCTTCAACAGTGGCGTGAGAAGATCCGAACCTCTACACCTCTCCATGTCCTCACAATTTCTGAGATGGCTGCTGTTGTTTCCCTCATCGCTTCCTTTATCTACCTTATGGTTTTCTTTGGCATTGGCTTCATCCTTCATCCCTTTTCCGTTCTTGAAGAAGAAGATGATGAAGCCGTCATTGAAAAATACTCCGATTCATGCCTCGCTGGAGTGTCTCCCAAGCTACCTCCGCTGGCGCCAAAAATCTTAGTCGAAAAAGTTGCTCCAGCACCGGTGCTTCTTTCCATGGAAGACGAGGAAGTTGTCCGTGCAGTGGTATCAGGATCGATTCCATCTTACTCGCTTGAATCGAAGCTCGGAGATTGCAAACGTGCAGCGGCTATTCGGAACAAAGCAGTGGAAAGAGTGACCAGAAGGTCACTTGAGGGTTTACCAATGGAAGGCTTTGATTATGATTCTATATTAGGACAGTGTTGTGAGATGCCGATAGGGTTTGTTCAGATTCCAGTAGGTGTTGCCGGTCCTTTGTTGCTTGACGAAATGGAGTACACTGTTCCGATGGCAACGACTGAAGGTTGTTTGGTTGCAAGTACTAACAGAGGCTGTAAAGCTATTTATGTTTCCGGTGGTGCTTCCGCTATTGTCCTCCGTGATGGCATGACTAGAGCCCCCGTTGTTAGATTCAACTCTGCCAAAAGAGCTTCTCAGTTAAAGTTCTTTTTAGAAGATCCTCAAAATTTTGATTCCCTCTCTCACACTTTCAACAAGTCAAGTAGATTTGCGAGATTGCAGAGCATTAAAGCTAATATGGCAGGAAAGAATTTATACATTAGATTCACTTGTTCAACCGGTGATGCAATGGGGATGAACATGGTATCCAAAGGTGTACAAAATGTACTTGATTTTCTTCAAATCGATTATCCTGATATGGATGTTATCGGTATATCAGGAAATTTTTGTTCGGACAAGAAAGCTGCGGCAGTTAATTGGATTGAAGGGAGAGGGAAATTTGTGGTGTGTGAGGCTGTAATTAAGGAAGAGGTGGTGAAGAAAGTGTTGAAGACAAGTGTTGACTCTTTGGTTGAGCTTAACATGCTCAAAAACCTTACTGGTTCTGCCATGGCCGGTGCTCTTGGCGGATTCAATGCACATGCTAGTAATATTGTTTCTGCTATTTACTTGGCTACAGGTCAAGATCCAGCTCAGAATGTTGAGAGTTCTCACTGTATGACCATGATGGAAGCTGTGAATGATGGCAAAGACCTTCATATCTCTGTCACTATGCCTTGCATTGAGGTGGGCACAGTAGGAGGGGGCACACAACTTGCATCACAATCAGCTTGTTTGAATTTACTCGGTGTTAAGGGTGCTAGTAAAGATTCACCAGGAGCAAATTCTAGGAAACTTGCAACTATTGTAGCGGGTTCAGTCCTTGCCGGAGAGCTCTCACTGATGTCTGCAATTGCAGCTGGGCAACTTGTTAAGAGTCACATGAAATACAACAGGTCTAGTAAAGATGTCTCCAAAGTTGCTTCATAA 1689 0.4352 MDVHQKSVCSDLSGKSSKAKNQKQDSQSQPSLYLTNAVFFGLFFSVVYFLLQQWREKIRTSTPLHVLTISEMAAVVSLIASFIYLMVFFGIGFILHPFSVLEEEDDEAVIEKYSDSCLAGVSPKLPPLAPKILVEKVAPAPVLLSMEDEEVVRAVVSGSIPSYSLESKLGDCKRAAAIRNKAVERVTRRSLEGLPMEGFDYDSILGQCCEMPIGFVQIPVGVAGPLLLDEMEYTVPMATTEGCLVASTNRGCKAIYVSGGASAIVLRDGMTRAPVVRFNSAKRASQLKFFLEDPQNFDSLSHTFNKSSRFARLQSIKANMAGKNLYIRFTCSTGDAMGMNMVSKGVQNVLDFLQIDYPDMDVIGISGNFCSDKKAAAVNWIEGRGKFVVCEAVIKEEVVKKVLKTSVDSLVELNMLKNLTGSAMAGALGGFNAHASNIVSAIYLATGQDPAQNVESSHCMTMMEAVNDGKDLHISVTMPCIEVGTVGGGTQLASQSACLNLLGVKGASKDSPGANSRKLATIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDVSKVAS* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g1232 562 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 269 385 IPR009023 -
Tpr2g1232 562 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 15 562 - -
Tpr2g1232 562 Pfam Hydroxymethylglutaryl-coenzyme A reductase 176 552 IPR002202 GO:0004420|GO:0015936
Tpr2g1232 562 MobiDBLite consensus disorder prediction 9 24 - -
Tpr2g1232 562 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 537 550 IPR023076 GO:0004420
Tpr2g1232 562 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 148 552 IPR002202 GO:0004420|GO:0015936
Tpr2g1232 562 Gene3D - 269 385 IPR009023 -
Tpr2g1232 562 Gene3D - 144 218 IPR023282 GO:0004420
Tpr2g1232 562 Gene3D - 219 539 IPR023074 GO:0004420
Tpr2g1232 562 MobiDBLite consensus disorder prediction 1 24 - -
Tpr2g1232 562 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 208 229 IPR002202 GO:0004420|GO:0015936
Tpr2g1232 562 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 235 255 IPR002202 GO:0004420|GO:0015936
Tpr2g1232 562 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 326 344 IPR002202 GO:0004420|GO:0015936
Tpr2g1232 562 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 366 391 IPR002202 GO:0004420|GO:0015936
Tpr2g1232 562 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 417 443 IPR002202 GO:0004420|GO:0015936
Tpr2g1232 562 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 471 492 IPR002202 GO:0004420|GO:0015936
Tpr2g1232 562 Coils Coil 560 562 - -
Tpr2g1232 562 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 483 490 IPR023076 GO:0004420
Tpr2g1232 562 CDD HMG-CoA_reductase_classI 149 552 IPR004554 GO:0004420|GO:0005515|GO:0008299
Tpr2g1232 562 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 133 541 IPR009029 GO:0015936|GO:0016616
Tpr2g1232 562 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 146 552 IPR004554 GO:0004420|GO:0005515|GO:0008299
Tpr2g1232 562 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 328 342 IPR023076 GO:0004420
Tpr2g1232 562 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 15 562 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g1232 Tpr-Chr2 14436000 14438359 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g1232 32 558 Lipid Metabolism Gene Families AT1G76490 72.316 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr2g1232 K00021 - gmx:100790033 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g1232 2 14436000 14438359 Tpr4g4406 4 51449059 51453017 ECH
Tpr2g1232 2 14436000 14438359 Tpr2g1232 2 14436000 14438359 ECH
Tpr2g1232 2 14436000 14438359 Tpr4g4406 4 51449059 51453017 PCT