Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g4372 ATGGCACGAAGATCCATACCGATCCTCAAACATCTCTTATCATCAACCCGATCTCAATCCCAATCCGAACCATTCAATTCAACTTTCAAACGATGCGTAACCTATATGCACCGTCCCGGCGACGGAACACCACGTCCTGTAACCCTAATCCCCGGCGACGGAATCGGACCACTTGTAACCGGCGCCGTTGAACAAGTCATGGAAGCGATGCACGCGCCTGTTTATTTCGAGAAATTTATTGTTCATGGTGATATGAAAGCTGTTCCTACCGAAGTTCTTGAATCGATCCGTAAAAATAAGGTTTGTCTTAAAGGTGGATTGATTACTCCTATGGGTGGTGGTGTTAGTTCTCTTAATGTTCAGCTTAGGAAAGAGCTTGATCTATATGCTTCTCTTGTTAATTGCTTTAATTTACCTGGTTTGGCTACGAGACATGATAATGTTGATATTGTTGTTATTCGGGAGAATACTGAAGGGGAGTATGCTGGTCTTGAACATGAGGTTGTTCCCGGCGTCGTCGAAAGTCTTAAGGTGATAACGAAGTTCTGTTCTGAGCGTATTGCTAAATATGCATTCGAGTATGCTTACCTGAATAACAGAAAGAAAGTGACTGCTGTCCACAAAGCAAATATAATGAAGCTTGCAGATGGTTTGTTCTTGGAATCTTGTCGAGAGGTTGCCACCAAGTATCCTGGCATTAAATATAATGAAATTATTGTGGATAATTGCTGCATGCAGCTTGTTTCGAAGCCTGAACAGTTTGATGTCATGGTCACCCCAAATCTGTACGGAAATCTAGTTGCAAATACTGCAGCAGGCATTGCTGGAGGCACTGGAGTTATGCCAGGAGGCAATGTTGGGGCTGAGCACGCAGTTTTTGAGCAGGGTGCTTCAGCAGGAAATGTTGGTAATGAAAAAGTAGCAGCACAAAAGACAGCCAACCCAGTAGCGCTCCTTCTCTCATCAGCTATGATGCTTAGGCATCTCCAATTTCCTGCATTTGCTGACCGTTTGGAAGTTGCCGTTGAAAAAGTCATTCTAGAGGGCAAGTATCGGACAAAGGATCTTGGAGGGACAAGCACCACCCAAGAAGTTGTCGATGCAGTAATAGATGCTTTAGATTGA 1125 0.44 MARRSIPILKHLLSSTRSQSQSEPFNSTFKRCVTYMHRPGDGTPRPVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKFIVHGDMKAVPTEVLESIRKNKVCLKGGLITPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLATRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEHAVFEQGASAGNVGNEKVAAQKTANPVALLLSSAMMLRHLQFPAFADRLEVAVEKVILEGKYRTKDLGGTSTTQEVVDAVIDALD* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g4372 374 Pfam Isocitrate/isopropylmalate dehydrogenase 47 369 IPR024084 -
Tpr4g4372 374 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 1 371 - -
Tpr4g4372 374 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 43 372 IPR004434 GO:0006099
Tpr4g4372 374 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 44 373 - -
Tpr4g4372 374 Gene3D Isopropylmalate Dehydrogenase 31 373 - -
Tpr4g4372 374 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 1 371 - -
Tpr4g4372 374 SMART Iso_dh_2 46 369 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g4372 Tpr-Chr4 50981847 50987632 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g4372 K00030 - gmx:100800050 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g4372 4 50981847 50987632 Tpr4g4372 4 50981847 50987632 ECH
Tpr2g1181 2 13823994 13828536 Tpr4g4372 4 50981847 50987632 PCT